Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0967 ATGAGGTTTAAATCACGCAAAACAATGCTGCATGAAGAGTGCAGAAAAGGAACAACAAGGGTGGAATATAGCAGCCAAGAAGAGAAACTAAGCAAAGATAATTTTTTGCTGATGGGTCTTAGTTTGAAGATGCAAATCCATCAACACCCTGTGGCTTTGAGGATGCAAGAGCAAAGTGGGAATAAAAGGAAGTACACTTTCATTCAGGCACAGAGAGCTTGGCTTCCAAAGTTTCTGCTTTTTTGGATCATGCTCATGGCTGTGATCAGTTGGTGCATTTATAGTAACATGGATGCTGATACCAAAGTCAGAAGGAGAGAAGTTCTTGGTAGCTTGTGTGATCAAAGAGCTAGAATGCTGCAAGATCAATTCAGTGTTAGTGTCAACCATGTCCATGCCCTTGCCATTCTTGTTTCAACCTTCCATTACTACAAAAGCCCTTCAGCCATTGATCAGGAAACCTTCGCCGAGTATACAGCCAGGACAGCATTTGAAAGACCATTACTGAGTGGGGTGGCCTATGCACAGAGAGTGGCTAACTCCGAGAGAGAAAGGTTTGAGAAGCAACATGGATGGGTTATAAAGACAATGGAAAGAGTGCCTTCACCGGTCAGAGATGAGTATGCGCCTGTGATATTTGCACAAGAAACTCTCTCATACCTTGAATCTCTTGATATGATGTCTGGGGAGGAGGACCGCGAAAACATTTTGAGGGCTAGGGCCACAGGGAAAGCTGTTCTGACTAGCCCCTTCAGGCTTCTAGGTTCTCACCATCTTGGTGTGGTTTTGACATTTCCTGTTTACAAATCTAAGCTCCCTCCGAAGCCAACAGTGGAAGAGTGCATTAAAGCAGCAGCAGGATATGTCGGAGGATCCTTTGATGTTGAGTCCCTTGTGGAGAATTTACTTGGTCAACTAGCTGGAAACCAAGCAATTTTGGTACATGTATATGATGTCACGAATTCAACTAACCCGCTAATCATGTATGGCAACCATTATGAAGACGGTGATGTTTCTCTTGTCCATGAAAGTAAACTTGATTTTGGAGATCCATACAGGAGACATCTGATGATATGTAGGTATCACCAGAAGGCGCCAACGAATTGGATAGCACTTACCACAGCATCCCTATTCTTTATTATTCTTTTATTAGTAGGTTACATTTTATACGGTGCTGGAAATCGTATTGTCAAAGTAGAAGATGATTTCCATGAGATGCAGGAATTAAAAGTCCGAGCAGAAGCAGCGGATGTTGCCAAGTCACAGTTTCTTGCTACTGTCTCTCATGAAATCAGAACACCAATGAATGGCATTTTAGGAATGCTTGGTCTGCTTCTAGATACAGAATTGAGTTCTACCCAACGAGATTATGCGCAAACTGCTCAAGCTTGTGGGAAGGCTCTGATAGCATTAATAAATGAAGTACTTGACAGAGCGAAGATTGAAGCTGGAAAGTTAGAGCTTGAAGCAGTTCCATTTGACCTTCGTTCCATACTTGATGATGTCCTTTCACTTTTTTCTGAGAAGTCTAGACACAAAGGTTTAGAGCTGGCAGTGTTTGTCTCTGATAACGTACCACATGTTGTTATGGGAGATCCAGGGAGATTCAGACAAATAATAACAAATCTTGTTGGCAACTCTGTCAAATTCACTGAACGAGGACATATATTCGTTAAAGTCTATCTTGCCGAAAATCGAAACTCCACAATGAATGGAAAATCTGAGATGTTTCTGAATGGAGGACCAGATGAAGTTTTACATACTTCCTTTGGTCATCATTCCAAAACCTTAAGTGGACGTGAAGCTGCAGATGAACGGAATAGCTGGGATAATTTTAAGCATCTTATTGCTGATGAAGAATTTTTCTTTGATGCTTCTATTAAAAAGATGGCCTCAAGGGAATCTTATGAAAAAATCACCTTGATGGTCTGTGTTGAGGACACTGGAATTGGAATTCCTTTCTCAGCACAGGATAGTATTTTCATGCCCTTTGTGCAGGCAGACAGTTCAACCTCTCGAAACTATGGCGGTACCGGCATTGGCTTAAGTATCAGTAAGTGCCTGGTTGAACTTATGGGTGGTAAGATAAACTTCATAAGCCGACCGCAGGTTGGAAGCACATTTTCATTTACTGCAGATTTTGGAACGTCTAAGAAAAATCCTACAACTGATGTGAAGAAACATAATTTGGAGGAACTGCCTTCTAGTTTTAGAGGGCTTAAAGCCATAGTGGTTGATGGAAAACCTGTTAGAGCTTCTGTGACTAGATACCATTTGAAGAGACTAGGGATACAAGCTAAAGTTGCAAATAGCATCAACAACGCTGTTTCTTTATGTGGGAAAATTGGTTCTTTCACCTCAGGATTATTTCAACCTGATATTATTATCGTCGAGAAGGATTCATGGGTTTCTGGAGAGGATGGGATATTCTTCAACGTGTGGCAACTGGACTGGAAGCAGAATGGTCATTTGTTTAAGATACCTCAATTGATCCTTCTTGCCACCAATATTAGTAATACCGAATTCGAAAAAGCTAAAGCCGCAGGTTTCACGGATACGGTGATCATGAAGCCGCTGAGAGCTAGTATGGTGGCTGCTTGTCTTCAGCAAATTCTGGGGATGGGGAAGAAGAGGCAGCTAGGGAAAGACAACCCTAATGGTTCCATTTTTCTACGAAGCATTCTTTGCGGAAAGAAAGTCTTAGTGGTTGACGACAACGTGGTAAACCGGAGGGTCGCTGCAGGGGCGCTAAAAAAGTTCGGGGCTGATGTGAAGTGTGCAGAAAGTGGCAAAGCTGCTCTTGAAATGCTTCAATTTCCTCACAGTTTTGATGCTTGCTTCATGGACATTCAAATGCCAGAAATGGATGGGTTTGAAGCAACACGGCGAATTCGAAAGATGGAGAGCAAGGCAGATGAGGAGATGAATAGTGAATATAGTGAAGCAGGAAATGGCAGGAAAAGCAAGTTTCATATACCGATATTGGCCATGACAGCCGATGTAATCCATGCAACATACGATGAATGCTTCAAATGTGGAATGGATGGGTATGTCTCAAAGCCCTTTGAGGAAGAGAATCTCTATCAAGAAGTTGCAAGGTTTTTCAAATCCAAAAACTCAGACTAA 3126 0.4207 MRFKSRKTMLHEECRKGTTRVEYSSQEEKLSKDNFLLMGLSLKMQIHQHPVALRMQEQSGNKRKYTFIQAQRAWLPKFLLFWIMLMAVISWCIYSNMDADTKVRRREVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYKSPSAIDQETFAEYTARTAFERPLLSGVAYAQRVANSERERFEKQHGWVIKTMERVPSPVRDEYAPVIFAQETLSYLESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPKPTVEECIKAAAGYVGGSFDVESLVENLLGQLAGNQAILVHVYDVTNSTNPLIMYGNHYEDGDVSLVHESKLDFGDPYRRHLMICRYHQKAPTNWIALTTASLFFIILLLVGYILYGAGNRIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLDTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDNVPHVVMGDPGRFRQIITNLVGNSVKFTERGHIFVKVYLAENRNSTMNGKSEMFLNGGPDEVLHTSFGHHSKTLSGREAADERNSWDNFKHLIADEEFFFDASIKKMASRESYEKITLMVCVEDTGIGIPFSAQDSIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGKINFISRPQVGSTFSFTADFGTSKKNPTTDVKKHNLEELPSSFRGLKAIVVDGKPVRASVTRYHLKRLGIQAKVANSINNAVSLCGKIGSFTSGLFQPDIIIVEKDSWVSGEDGIFFNVWQLDWKQNGHLFKIPQLILLATNISNTEFEKAKAAGFTDTVIMKPLRASMVAACLQQILGMGKKRQLGKDNPNGSIFLRSILCGKKVLVVDDNVVNRRVAAGALKKFGADVKCAESGKAALEMLQFPHSFDACFMDIQMPEMDGFEATRRIRKMESKADEEMNSEYSEAGNGRKSKFHIPILAMTADVIHATYDECFKCGMDGYVSKPFEEENLYQEVARFFKSKNSD 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0967 1041 Gene3D CHASE domain 150 365 IPR042240 -
Lal16g0967 1041 Gene3D - 97 149 - -
Lal16g0967 1041 CDD HATPase_EvgS-ArcB-TorS-like 536 714 - -
Lal16g0967 1041 SMART REC_2 898 1031 IPR001789 GO:0000160
Lal16g0967 1041 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 473 711 IPR036890 -
Lal16g0967 1041 SUPERFAMILY CheY-like 737 873 IPR011006 -
Lal16g0967 1041 Pfam Response regulator receiver domain 900 1031 IPR001789 GO:0000160
Lal16g0967 1041 Pfam His Kinase A (phospho-acceptor) domain 419 484 IPR003661 GO:0000155|GO:0007165
Lal16g0967 1041 CDD REC_hyHK_CKI1_RcsC-like 910 1031 - -
Lal16g0967 1041 SMART HisKA_10 419 484 IPR003661 GO:0000155|GO:0007165
Lal16g0967 1041 Gene3D - 483 720 IPR036890 -
Lal16g0967 1041 ProSiteProfiles CHASE domain profile. 146 358 IPR006189 -
Lal16g0967 1041 PANTHER HISTIDINE KINASE 4 60 1038 - -
Lal16g0967 1041 SMART CHASE_2 146 331 IPR006189 -
Lal16g0967 1041 SMART HKATPase_4 531 716 IPR003594 -
Lal16g0967 1041 CDD HisKA 419 480 IPR003661 GO:0000155|GO:0007165
Lal16g0967 1041 Pfam CHASE domain 149 329 IPR006189 -
Lal16g0967 1041 Coils Coil 469 489 - -
Lal16g0967 1041 Gene3D - 735 876 - -
Lal16g0967 1041 Gene3D - 893 1040 - -
Lal16g0967 1041 ProSiteProfiles Response regulatory domain profile. 741 872 IPR001789 GO:0000160
Lal16g0967 1041 ProSiteProfiles Histidine kinase domain profile. 426 716 IPR005467 -
Lal16g0967 1041 PANTHER TWO-COMPONENT HISTIDINE KINASE 60 1038 - -
Lal16g0967 1041 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 405 485 IPR036097 GO:0000155|GO:0007165
Lal16g0967 1041 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 531 714 IPR003594 -
Lal16g0967 1041 PRINTS Bacterial sensor protein C-terminal signature 641 655 IPR004358 GO:0016310|GO:0016772
Lal16g0967 1041 PRINTS Bacterial sensor protein C-terminal signature 659 669 IPR004358 GO:0016310|GO:0016772
Lal16g0967 1041 PRINTS Bacterial sensor protein C-terminal signature 676 694 IPR004358 GO:0016310|GO:0016772
Lal16g0967 1041 PRINTS Bacterial sensor protein C-terminal signature 700 713 IPR004358 GO:0016310|GO:0016772
Lal16g0967 1041 SUPERFAMILY CheY-like 897 1035 IPR011006 -
Lal16g0967 1041 ProSiteProfiles Response regulatory domain profile. 899 1035 IPR001789 GO:0000160
Lal16g0967 1041 Gene3D - 393 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0967 Lal-Chr16 6419220 6426076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0967 49 1036 Histidine Kinase Gene Family AT2G01830 69.223 0.0 1368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal16g0967 HATPase_c 1.1e-30 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0967 16 6419220 6426076 Lal16g0967 16 6419220 6426076 ECH
Lal16g0967 16 6419220 6426076 Lal15g0941 15 7286916 7293149 LSH