Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0920 ATGGAAGGAGGAGGACCAGAGAACTCCAATTCTGCCTATAGAGAGTGTTTGAGAAACCATGCAGCCAGTCTTGGCAGCTATGCTACCGATGGCTGCGGAGAGTTTACGGTGGACAGTATGTCACCTGCAGGCCTACAATGCGCGGCCTGCGGGTGTCATCGCAATTTCCACCGCAAACTCAAGTACCCTCCTGGAGGAGGGCATAGAGGGCTCATCAACTACACAGCCAGCCATGGTCCAGATCCTGAGACCACGGCTGACATGATGGACTATTCTGGTGGCGGCGGTGAGGGTGGTAGTGAAGGGAGGCTGATGGAATTAGAGAGGAGTGGGAGTGGAAAGAAGCGGTTCAGGTCAAAGTTCACATCAGATCAGAAGGAGAAGATGCTGGCTTTTGCTGAGAAGCTTGGATGGAAGCTGCAGAGGAAGGATCTTGATGATGAAATAGAGAGGTTTTGTAAAGGTATTGGAGTGAGTAGGCAAATATTCAAAGTGTGGATGCATAACCATAAGAACTCTTCTTCCTCCTCTTCTGCATCTACCGGCAATGTCTCCTCTCTTACCCAGTAA 570 0.5035 MEGGGPENSNSAYRECLRNHAASLGSYATDGCGEFTVDSMSPAGLQCAACGCHRNFHRKLKYPPGGGHRGLINYTASHGPDPETTADMMDYSGGGGEGGSEGRLMELERSGSGKKRFRSKFTSDQKEKMLAFAEKLGWKLQRKDLDDEIERFCKGIGVSRQIFKVWMHNHKNSSSSSSASTGNVSSLTQ 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0920 189 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 8 180 - -
Lal16g0920 189 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 13 60 IPR006456 -
Lal16g0920 189 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 8 180 - -
Lal16g0920 189 Gene3D - 100 178 - -
Lal16g0920 189 SUPERFAMILY Homeodomain-like 106 172 IPR009057 -
Lal16g0920 189 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 114 172 IPR006455 -
Lal16g0920 189 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 13 59 IPR006456 -
Lal16g0920 189 MobiDBLite consensus disorder prediction 170 189 - -
Lal16g0920 189 Pfam ZF-HD protein dimerisation region 12 60 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0920 Lal-Chr16 6096800 6097369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0920 13 173 ZF-HD Transcription Factor Family AT4G24660 45.714 1.56e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lal16g0920 ZF-HD_dimer 8.2e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0920 16 6096800 6097369 Lal16g0920 16 6096800 6097369 ECH
Lal16g0920 16 6096800 6097369 Lal23g0713 23 9770205 9770756 LSH
Lal16g0920 16 6096800 6097369 Lal8g0487 8 3306824 3307294 PCT
Lal8g0487 8 3306824 3307294 Lal16g0920 16 6096800 6097369 PCT