Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0964 ATGTCTACTTGCAAAGCAATAATGTCTTCACTAACCCACATGCGTCCTCTAACATGCGCCGCATCAGCATCCTCTTCTTATCCTTCACGACTAGCTCCATACCCACCTGACCTAATAAAATGGGTCACAAAAGAAGGTGGTTTCGTGCACCCAGCGGTTAAGATAGCACAATCTCTTAACTCCAATGGTCTTGGACTAGTGACCAATCAACAAATACCACGTGGCACTGACCTTATTATTCTACCTCATCATCTTCCTTTGAGTTTTAGGTCATTTGATTCTGATCATACTCAAGATTCCGTTGATTCTGTGCTCGCTCAATTGGCACACCGAATTCCTGAGGAACTATGGGCAATGAAACTTGGTTTGAAACTTCTACAAGAAAGAGCAAAAGTTGGATCATTTTGGTGGCCATATATCAGCAATCTCCCTGAAACATACAGTGTGCCTATCTTCTTTCCTGGAGAAGACATAAAGAACTTGCAGTATGCTCCTCTTCTTCACCAGGTAAACAAAAGATGTCGGTTTCTTCTTGACTTTGAGCAAGAGATCAAGCGTGCCTTAGTCCATCTTACACCAGATAAGCATCCTTTTGGTGACCAAGAAGTACATGCATCCTCTCTTGGATGGGCAATGGCAGCAGTTTCATCTCGAGCATTCCGGTTATATGGTAGCAAGCGTCCAGATGGAGTCCAGATTGATGTACCCATGATGCTCCCTCTCATTGATATGTGCAACCATAGTTTCAGTCCAAATGCCAGAATTGTTCAGGAACGAGATACTGATAACCTGAAGATGCAAGTTGTGGCTGAGAGGGAAATGAAAGAAGATGATCCTTTATTACTTAACTATGGCTGTTTAAGCAATGATTTTTTCCTTCTTGATTATGGATTTGTGGTAGACTCCAACCCATATGATCATATTGAGCTCAAATATGATGGTGCTCTTTTGGATGCTGCAAGCATGGCAGCTGGAGTTTCATCACCAAACTTCTCGGCACCTGCTCCGTGGCAGGAACTGATTTTGTCTCAGCTAAATCTAGCTGGAGAAGCTCCAGATCTTAAGGTAACCTTTGGTGGCCAAGAAATAGTAGAGGGACGCTTGTTAGCTGCATTGAGAGTACTCCTTGCAAGTAATATGGAAACTGCACAGAACTCTGACCTTAACACACTCAAGTCTCTATCAGCTGAAGCTCCTCTTGGTGTTGCAAATGAGAAAGCTGTATTTCGTACCCTTATTGCTCTTTGTGTCATTGCGCTGGAACACTTCCCTACGAAAATAATGGATGATGAATCATTGCTGAAGCAGGGTGCTTCAGGATCAACTGAGTTGGCCATTCAATTCAGAATCCAAAAGAAATCTGTGATTGTAGATGTAATGAGATCTCTCTCCAGAAAACTAAAGCTTCTATCATCCAAGGAATCTGTGACTGCTGAAGGCTAA 1443 0.4276 MSTCKAIMSSLTHMRPLTCAASASSSYPSRLAPYPPDLIKWVTKEGGFVHPAVKIAQSLNSNGLGLVTNQQIPRGTDLIILPHHLPLSFRSFDSDHTQDSVDSVLAQLAHRIPEELWAMKLGLKLLQERAKVGSFWWPYISNLPETYSVPIFFPGEDIKNLQYAPLLHQVNKRCRFLLDFEQEIKRALVHLTPDKHPFGDQEVHASSLGWAMAAVSSRAFRLYGSKRPDGVQIDVPMMLPLIDMCNHSFSPNARIVQERDTDNLKMQVVAEREMKEDDPLLLNYGCLSNDFFLLDYGFVVDSNPYDHIELKYDGALLDAASMAAGVSSPNFSAPAPWQELILSQLNLAGEAPDLKVTFGGQEIVEGRLLAALRVLLASNMETAQNSDLNTLKSLSAEAPLGVANEKAVFRTLIALCVIALEHFPTKIMDDESLLKQGASGSTELAIQFRIQKKSVIVDVMRSLSRKLKLLSSKESVTAEG 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0964 480 Gene3D - 335 477 IPR036464 -
Lal15g0964 480 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 295 475 IPR036464 -
Lal15g0964 480 ProSiteProfiles SET domain profile. 51 285 IPR001214 GO:0005515
Lal15g0964 480 PANTHER F21J9.27 5 477 - -
Lal15g0964 480 CDD SET_LSMT 52 299 - -
Lal15g0964 480 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 5 477 - -
Lal15g0964 480 Gene3D set domain protein methyltransferase, domain 1 3 298 - -
Lal15g0964 480 Pfam Rubisco LSMT substrate-binding 334 455 IPR015353 -
Lal15g0964 480 Pfam SET domain 63 285 IPR001214 GO:0005515
Lal15g0964 480 SUPERFAMILY SET domain 35 303 IPR046341 -
Lal15g0964 480 SMART set_7 51 291 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0964 Lal-Chr15 7553544 7558361 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lal15g0964 SET 2.7e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0964 15 7553544 7558361 Lal15g0964 15 7553544 7558361 ECH
Lal16g0984 16 6551216 6557387 Lal15g0964 15 7553544 7558361 LSH