Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0960 ATGATGATGGAGTCTAAGGCTTTGAGGTTCATAACCCATCAATCAATATTCTCTACCGTTCGATCTGGTGATCTTGATGGATTGAAGGAAGTAGTGGAAGAGTTGAACAGAGAACAATCATCATTATCTGTTTCTGATGTAATGTCACTTCAGAATGATGCTGGGGAAACACTTCTTTATATAGCTGCAGAGCATAATCTAGTTGAAGTGTTGAGGTTCTTGATCAAGTTATGTGATTTTGAAGTGGTTAAGATCAGTTCCAAGTCTGATATGAACCCTTTTCATGTTGCAGCTAAGCGTGGCCATCTAGATATTGTGAAGGAAATTTTGAGTACTTGGCCTGAGGTTTGTCAGTTATGTGATTCCAAGAACACTAGCCCCCTATATTCAGCTGCTGAACATGACCATTTGGATGTGGTGAATGCTATCTTGGATGTTGATATGAGTTCTATGATGATAGTTAGGAAAAACGGGAAAACTGCATTGCACAATGCTGCTAGGTATAACATCCTTCGCATTGTAAAGGAACTTATCGCCCGAGATCCAGGAATAGTGTGCATCAAGGATAAAAAAGGTCAAACTGCACTGCATATGGCTGTCAAAGGACAGAGTAGTTCACCTGTTGAGGAGATATTATTAGCCGATCCTACTATATTGAACGAACGAGATAAGAAGGGTAACACAGCTCTTCACATGGCTACGAGGAAAGGCCGTTCGCAGATAGTGAACCTTTTGCTAAGCTATACAGCTATTGACATTAATGCTATCAATAAGCATAAGGAAACAGCCTTGGATTTGGCAGATAAACTGCCATATGGAGATTCAGCTTTTGAAATCAAGGAAGCACTTGCAGAATATGGTGCTAAGTATGCCAGGCATGTCGACAAAGTAGACGAGGCCATGGAACTCAAGAGAACTGTAAGTGATATAAAGCATGAAGTGCAGTCACAACTTGTACAAAATGAAAAAACTCACCGGCGAGTTTCTGGTATCGCTAAGGAATTGAAGAAACTTCATAGAGAAGCAGTTCAGAACACTATTAATTCGGTCACAGTGGTTGCTGTCCTTTTTGCCTCCATAGCATTCATTGCTATATTCAATTTGCCTGGCCAATATATAATGTCAGGACCAGATACAGGAGAGTCCAATATGGCCCGTCATGTCGGCTTCAAAGTTTTCATCCTCTTGAATTCTACATCCCTTTTCATTTCTCTTGCAGTTGTTGTGGTTCAAATCACATTGGTAGCTTGGGACACAAGGGCTCAAAAAAAGATTGTGTCAGTGATTAATAAGCTCATGTGGGCTGCATGTGCATGCACTTGTGCTGCTTATCTTGCAATAGCTTTTGAGGTTGTTGGAAGACAAACATGGATGGCTGTTACTATCACCCTTTTAGGAACACCAATTCTACTTGGCACTCTAGCATGCTTGTGCTACTTTGTTTTTAAACAACATTTCGGGAGTTTCCGCGGTGATCGGATAAAGAGAGCAAGTGGAAGCAAATCTTTCTCATGGTCTTATTCTGCACATATATCAGACTTGGATGAACATGATTCTGACATTGAAAAGATCTATGCATTGTAA 1584 0.4053 MMMESKALRFITHQSIFSTVRSGDLDGLKEVVEELNREQSSLSVSDVMSLQNDAGETLLYIAAEHNLVEVLRFLIKLCDFEVVKISSKSDMNPFHVAAKRGHLDIVKEILSTWPEVCQLCDSKNTSPLYSAAEHDHLDVVNAILDVDMSSMMIVRKNGKTALHNAARYNILRIVKELIARDPGIVCIKDKKGQTALHMAVKGQSSSPVEEILLADPTILNERDKKGNTALHMATRKGRSQIVNLLLSYTAIDINAINKHKETALDLADKLPYGDSAFEIKEALAEYGAKYARHVDKVDEAMELKRTVSDIKHEVQSQLVQNEKTHRRVSGIAKELKKLHREAVQNTINSVTVVAVLFASIAFIAIFNLPGQYIMSGPDTGESNMARHVGFKVFILLNSTSLFISLAVVVVQITLVAWDTRAQKKIVSVINKLMWAACACTCAAYLAIAFEVVGRQTWMAVTITLLGTPILLGTLACLCYFVFKQHFGSFRGDRIKRASGSKSFSWSYSAHISDLDEHDSDIEKIYAL 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0960 527 ProSiteProfiles Ankyrin repeat region circular profile. 225 250 - -
Lal15g0960 527 SUPERFAMILY Ankyrin repeat 16 288 IPR036770 -
Lal15g0960 527 SMART ANK_2a 157 186 IPR002110 GO:0005515
Lal15g0960 527 SMART ANK_2a 225 255 IPR002110 GO:0005515
Lal15g0960 527 SMART ANK_2a 54 82 IPR002110 GO:0005515
Lal15g0960 527 SMART ANK_2a 89 118 IPR002110 GO:0005515
Lal15g0960 527 SMART ANK_2a 123 153 IPR002110 GO:0005515
Lal15g0960 527 SMART ANK_2a 191 220 IPR002110 GO:0005515
Lal15g0960 527 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 4 527 - -
Lal15g0960 527 Pfam Domain of unknown function 341 448 IPR026961 -
Lal15g0960 527 ProSiteProfiles Ankyrin repeat profile. 191 224 IPR002110 GO:0005515
Lal15g0960 527 Pfam Ankyrin repeats (3 copies) 48 110 IPR002110 GO:0005515
Lal15g0960 527 Pfam Ankyrin repeats (3 copies) 189 255 IPR002110 GO:0005515
Lal15g0960 527 Pfam Ankyrin repeats (3 copies) 121 180 IPR002110 GO:0005515
Lal15g0960 527 Gene3D - 151 310 IPR036770 -
Lal15g0960 527 PANTHER ANKYRIN REPEAT PLANT-LIKE PROTEIN 4 527 - -
Lal15g0960 527 ProSiteProfiles Ankyrin repeat profile. 225 250 IPR002110 GO:0005515
Lal15g0960 527 Gene3D - 5 150 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0960 Lal-Chr15 7493686 7497970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0960 3 527 Miscellaneous Gene Families AT2G01680 67.228 0.0 710
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0960 15 7493686 7497970 Lal15g0960 15 7493686 7497970 ECH
Lal15g0960 15 7493686 7497970 Lal23g0655 23 9269950 9275252 LSH