Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0952 ATGGTGAAATCAGTTTCTGATTCTTCAGTGGCTCCCTTTCTCAACAAGTGTTATGAAATGGTCGATGACCCTTTCACTGACGATATCATATCTTGGACCAAGACCGGTACCGACAGTTTTGTTATTTGGGATATGACCAAATTCTCCCTCACTCTTCTTCCGTCTTACTTCAAACACAACAATTTCTCCAGCTTCATTCGCCAACTCAATATCTATGGTTTCAGGAAAGTTGATACAGATTGCTGGGAATTTTCCAATGACAACTTCGTCAGAGGTCAAAAGCATTTGTTGAAGAATATTCGTAGAAGGAAACATCCACACATTGTAGATCAGCAGAAACCTTTGCCGCAGCTTGAAAATTCTGACAAACCATCATCACAAGAAGCAGCAAGTCATGACCTTAGGAATGATATTGAGAATCTAAAGTCTGATAAAAATTCCCTTGTGCAGGAGTTTGTCAAACTTAGGCAGCGCCAGGAATCTGCTGAGAGTAAGTTGCTGCTCTTCGACGGTCGCCTTCAAGGAATGGAAGAGTGTCAGGAGCAGATGTTTTCATTCTTAGCCATGGTTGTGCAGAGCCCTGGGTTCATGGTTAAGTTGTTTCAGCCTCAGGAAAATAATTGGTGCATGTCTGAACCAGGGAATATGCTGGACCAAGGTAAACAAGATGACTTTCCAGCTGTTTCTGATGGGACGATAATAAAGTATGAACCACCCGTAGGTGAAAAACGAAAGCCTATAGCTCCTCTATCTCCTCGTTTTGTTAAACAACCAGAGCCTGAGATTTTTGCAGATGGGTTAAAAGACTACTGCATCAGTTCAGAATTCTTGAAAGTGCTTATGGATGAAAAACTGTCTCCCTTGGATAACCATTCTCCGTTTCTTCTACCAGATTTACCTGATGATGGTTCATGGGAACAGCTTTTCCGAGGTAGCCCAATCCTGGAAAACGTTGACGATTTTAATCAGGAAAGTAAGGAGCCAACTGCTAGTGGAATGGATATAGAAACTACTATACCCGAAACATCAAACGAAGAATCTGAAACTTTTGAGTCGTTGATTGAAGAATTGGAGAAAACTCAAAAGAGTAGGTTGGAATTATGTTCTGATGGGGTACATCTGGAGGAGCTGCAGAGTTTGGAATCTCTAACTGAGCAAATTGAACTTTTACTTTCTGAAACTGACAATGATGAGGAAGGAACTAGGAAGTGA 1212 0.4134 MVKSVSDSSVAPFLNKCYEMVDDPFTDDIISWTKTGTDSFVIWDMTKFSLTLLPSYFKHNNFSSFIRQLNIYGFRKVDTDCWEFSNDNFVRGQKHLLKNIRRRKHPHIVDQQKPLPQLENSDKPSSQEAASHDLRNDIENLKSDKNSLVQEFVKLRQRQESAESKLLLFDGRLQGMEECQEQMFSFLAMVVQSPGFMVKLFQPQENNWCMSEPGNMLDQGKQDDFPAVSDGTIIKYEPPVGEKRKPIAPLSPRFVKQPEPEIFADGLKDYCISSEFLKVLMDEKLSPLDNHSPFLLPDLPDDGSWEQLFRGSPILENVDDFNQESKEPTASGMDIETTIPETSNEESETFESLIEELEKTQKSRLELCSDGVHLEELQSLESLTEQIELLLSETDNDEEGTRK 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0952 403 PRINTS Heat shock factor (HSF) domain signature 13 36 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal15g0952 403 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal15g0952 403 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal15g0952 403 MobiDBLite consensus disorder prediction 111 131 - -
Lal15g0952 403 Pfam HSF-type DNA-binding 13 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal15g0952 403 SMART hsfneu3 9 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal15g0952 403 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 345 IPR027725 -
Lal15g0952 403 Coils Coil 131 165 - -
Lal15g0952 403 Gene3D - 5 104 IPR036388 -
Lal15g0952 403 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal15g0952 403 SUPERFAMILY "Winged helix" DNA-binding domain 8 103 IPR036390 -
Lal15g0952 403 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-8 1 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0952 Lal-Chr15 7393239 7397469 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0952 10 313 HSF AT1G67970 44.771 8.90e-82 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lal15g0952 HSF_DNA-bind 1.4e-30 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0952 15 7393239 7397469 Lal15g0952 15 7393239 7397469 ECH