LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal15g0943	ATGGAGAAACCTCAAATGGGTTTTGGAGTTTCTTCCATAATCTGTTTTGTTTTGGTTCTTTCTGTGATGGTAATCGTAGCTAGGGGCCAAGATTATGAGGTGATGATAATGTTGAAGAAGATGATCATTAATGCCCCTACTAATTTACAATGGACAGATTCTGATGTATGCAAATGGAATCATGTTCAATGTGATAAAGGAAAACGTGTCACTGCTATTCAAATTGGTAATCAAAATCTTCAAGGTTCTCTTCCTAAGGAACTTGAGAAACTTTCAGAGTTAACAAATTTTGAGTGCCAAGGAAACAATTTCACTGGTTCATTCCCTTACCTTACCAAATCCTTAGAAAATTTGTTGATTCATGGAAACATGTTCAGCTCCTTCCCCAATGATTTCTTCATGGATATGAGCAATTTGGAAGGGGTAAGTTTAGATGACAACCCTTTCCCTCAATGGCAGGTTCCTCATAGTTTAAAGGATTGTGTTGCACTTCAGAATTTCAGTGCTCAAAATGTTGGTTTTGTTGGGACAATCCCAGATTTTTTTGGCACTGGTGGTCCTTTCCCAGGTCTGCTTAACTTAGCCTTATCTCGTAATTATTTCGAAGGTAGTTTGCCTGCAAGCTTTTCAGGCAGTTCAATAGAGATCCTTTTGCTTAATGGACAGAATAGTAATTCTAAGCTCAATGGTACCCTTCAGGTGTTAAAGAATATGACATCCTTGAAGCAAATTTGGGTTCATGGTAATTCATTCACCGGTCCTATACCCGACTTCTCACATCATGATCAACTTTATGATTTGAGTTTGAGGGATAACCAGTTAACTGGTGTTATTCCACCCTCTCTCGTCACTCTTCCGAGTCTTAAAGTCGTGAATTTGACCAATAATGATTTACAAGGACCCCCTCCAGTGTTCCAAAATGGGGCAAAAGTTGATAATAATATGATCAGTGGCAGAAATCAGTTTTGCACAAAGATACCAGGGCAACCATGTAGCCCCTTAGTCACTGCTTTACTATCTGTTGTTGAACCTTTGGGCTATCCTCTCAGGTTTGCTGAAAGTTGGGAGGGTAATGATCCATGTGCTAATAAATGGACTGGGATAGTTTGTATCGGTGGAAACATTTCTGTTATAAACTTTCAGAGCATGGCCTTGTCTGGCTCTATTTCTCCGACTTTTGCTAAACTTACATCTGTCACAAAGTTGCTTCTTGCTAACAATCATATCACCGGTACCATACCAACTGAACTTACTAGTATGCCTCTTTTGCAAGAGTTAGATGTTTCGAATAATAACTTATATGGGCGTGTACCATCATTCCGTGAAGGCGTGATTCTTAAATTTCGTGGGAATCCTGATATCGGAAAAGATAAACCTGCTTCTGGAGCTGGCTCGGGTTCTTTTATAGCTGATGAAATAAAGAATCATATCTGGGTTGTCATTGTAATTGTGGTAGGGGTTGTTATTTTACTTGGTATAGGGATACTATTATTTATTAAGTACAGAAGAAAAATGAAGCCTAAAGGAAAAGTTCAAAATCCAACTGCAATAGTATATCCTCACCATTCTTCAGATGACAATGCTATGAGGATAAGTATTGCTGGTGGAGGAACTGATCCGTTAAGTCCAAGGAGCAATGTTTATCCGGGGGAAGCTGGTAGCATGGTGATTTCGATTCAAGTTTTGAGAGACGTTACCAACAATTTTAGTGAAGAAAACATATTAGGGAAGGGTGGTTTTGGCACTGTGTACAAGGGAGAGTTGGATGATGGGACAAAGATTGCAGTGAAAAGGATGCAATCAGCAAATATGGCAGAGAAGGGACTGAGTGAGTTTATGGTTGAAATTGCAGTACTCACTAAGGTGAGACACAAGCATTTGGTTTCACTCTTAGGGTATTGCTTGGATGGAGATGAGAGACTTCTTGTTTATGAATACATGCCTCAAGGTGCTCTTAGTAGATTATTGTTCCATTGGAAAGAGGAAGGTCTAAAACCACTTGAATGGAAGACAAGGCTTACTATTGCGTTGGATGTCGCTAGAGGTGTCGAATATCTTCATGATTTGACTCAACAAATTTTTATCCATAGGGATCTCAAACCATCCAACATTTTGCTTGGAGATGATTTGAGAGCTAAAGTATCAGACTTTGGATTGGTTCGGCTTGCTCCACAAGGAAAAGCTTCATTTCAAACTGGGCTAGCTGGGACTTTTGGATATCTAGCACCAGAGTATGCAGCTACCGGACGACTTACAACAAAAGTTGATGTATATAGTTTTGGAGTGATCCTTATGGAGATGATAACCGGAAGAAAGGCACTTGACGAAAGCCGACCAGAAGAGAACTTCCACCTTGTAACATGGTTCCGCAGGATGCTACTGAAAAAAGATTTATTCCCAATGATCATTGATCCGACAATTTCTGTTGATGACGAAACCTTAGCCAGCATTAGCACTGTTGCAGAGTTGGCAGGCCACTGCACTTCAAGAGAGCCTTACCAGCGCCCTGATATGAGTCACGCGGTGCGTGTGCTATCACCTCTTGTCGAGGTTTGGAAGCCTTCAGAACCAACTGATGACACATATGGGGTCAACTTTGATATGACACTACCACAAGCACTCCAAAAGTGGGAAGATTATGAAGGTAACAGTACCTGGAATAGTACTTATTCTTCTTCATCAGCCAACACTAATACTAATGGACATAGCCAAGCATTTCCCTTAGGCCATCTTTAA	2736	0.4035	MEKPQMGFGVSSIICFVLVLSVMVIVARGQDYEVMIMLKKMIINAPTNLQWTDSDVCKWNHVQCDKGKRVTAIQIGNQNLQGSLPKELEKLSELTNFECQGNNFTGSFPYLTKSLENLLIHGNMFSSFPNDFFMDMSNLEGVSLDDNPFPQWQVPHSLKDCVALQNFSAQNVGFVGTIPDFFGTGGPFPGLLNLALSRNYFEGSLPASFSGSSIEILLLNGQNSNSKLNGTLQVLKNMTSLKQIWVHGNSFTGPIPDFSHHDQLYDLSLRDNQLTGVIPPSLVTLPSLKVVNLTNNDLQGPPPVFQNGAKVDNNMISGRNQFCTKIPGQPCSPLVTALLSVVEPLGYPLRFAESWEGNDPCANKWTGIVCIGGNISVINFQSMALSGSISPTFAKLTSVTKLLLANNHITGTIPTELTSMPLLQELDVSNNNLYGRVPSFREGVILKFRGNPDIGKDKPASGAGSGSFIADEIKNHIWVVIVIVVGVVILLGIGILLFIKYRRKMKPKGKVQNPTAIVYPHHSSDDNAMRISIAGGGTDPLSPRSNVYPGEAGSMVISIQVLRDVTNNFSEENILGKGGFGTVYKGELDDGTKIAVKRMQSANMAEKGLSEFMVEIAVLTKVRHKHLVSLLGYCLDGDERLLVYEYMPQGALSRLLFHWKEEGLKPLEWKTRLTIALDVARGVEYLHDLTQQIFIHRDLKPSNILLGDDLRAKVSDFGLVRLAPQGKASFQTGLAGTFGYLAPEYAATGRLTTKVDVYSFGVILMEMITGRKALDESRPEENFHLVTWFRRMLLKKDLFPMIIDPTISVDDETLASISTVAELAGHCTSREPYQRPDMSHAVRVLSPLVEVWKPSEPTDDTYGVNFDMTLPQALQKWEDYEGNSTWNSTYSSSSANTNTNGHSQAFPLGHL	911

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal15g0943	911	PANTHER	TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED	6	900	-	-
	Lal15g0943	911	Gene3D	Ribonuclease Inhibitor	29	329	IPR032675	-
	Lal15g0943	911	ProSiteProfiles	Protein kinase domain profile.	569	849	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal15g0943	911	SUPERFAMILY	Protein kinase-like (PK-like)	557	879	IPR011009	-
	Lal15g0943	911	ProSitePatterns	Protein kinases ATP-binding region signature.	575	597	IPR017441	GO:0005524
	Lal15g0943	911	MobiDBLite	consensus disorder prediction	889	911	-	-
	Lal15g0943	911	Gene3D	Ribonuclease Inhibitor	334	458	IPR032675	-
	Lal15g0943	911	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	694	706	IPR008271	GO:0004672\|GO:0006468
	Lal15g0943	911	SUPERFAMILY	L domain-like	42	323	-	-
	Lal15g0943	911	Pfam	Leucine rich repeat N-terminal domain	336	370	IPR013210	-
	Lal15g0943	911	Pfam	Leucine rich repeat N-terminal domain	30	65	IPR013210	-
	Lal15g0943	911	SUPERFAMILY	L domain-like	334	440	-	-
	Lal15g0943	911	PANTHER	OSJNBA0070M12.3 PROTEIN	6	900	-	-
	Lal15g0943	911	Pfam	Protein kinase domain	570	842	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal15g0943	911	CDD	STKc_IRAK	575	848	-	-
	Lal15g0943	911	SMART	serkin_6	569	849	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal15g0943	911	Gene3D	Phosphorylase Kinase; domain 1	543	646	-	-
	Lal15g0943	911	Gene3D	Transferase(Phosphotransferase) domain 1	647	860	-	-
	Lal15g0943	911	MobiDBLite	consensus disorder prediction	889	905	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal15g0943	Lal-Chr15	7307008	7310386	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal15g0943	70	860	Receptor kinase-like Gene Family	AT1G55610	28.571	4.86e-81	283

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-IX	Lal15g0943		Pkinase	5.6e-48	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal15g0943	15	7307008	7310386	Lal15g0943	15	7307008	7310386	ECH
	Lal15g0943	15	7307008	7310386	Lal23g0674	23	9409469	9413171	LSH