Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0941 ATGGGCTTTGGTTTGAATCTTAATCAGAGAGAAGAAAAACAAAAAAACAAGATTTTTTGGCCAATCATTCACCATGCTTGGTTTTTATGCTTTTCCTTCTCCTTTCTGAGGCATGAGGGGTTTAGAAAGGGAACAAGAAGGGTAAAATATAGCAGACAAGAAGAGAAACTAAGCATAGATAATTTGTTGCTGATGGGTCTAAGTTTGAAGATGCAGATCCATCAACACCCTTTGGCTTTGAGGATGCATGAGCAAAGTGGGAATAAAGGGAAGTACACTTTCATTCAAGCTCATAGAGCTTGGCTTTCAAAGTTTCTGCTTTTTTGGATCATGCTCATGGCTTTAACCAGTTGGTGCATCTATAGTAACATGGATGCTGACACCAAAGTCAGAAGGAGAGAGGTTCTTGGTAGCTTGTGTGATCAAAGGGCTAGAATGCTTCAAGATCAATTCAGTGTTAGTGTTAACCATGTTCATGCCCTTGCTATCCTTGTCTCAACCTTCCATTACTATAGAAGCCCTTCTGCCATTGACCAGGAAACCTTCACGGAGTATACAGCCAGGACAGCTTTCGAAAGGCCATTACTGAGTGGGGTAGCTTATGCACAACGAGTGGTTAACTCGGAGAGGGAAAGATTTGAGAAGCGACATGGATGGGTTATAAAGACAATGCAAAGAGAGCCTTCGCAGATTCGAGATGAGTATGCACCGGTGATATTTGCACAAGAAACTGTCTCATACCTTGAATCAATTGATATGATGTCTGGGGAGGAGGACCGAGAAAACATTTTGAGAGCTAGGGCAACAGGAAAAGCTGTTCTGACTAGCCCCTTCAGGCTTCTGGGTTCTCATCATCTTGGTGTGGTTTTGACATTTCCTGTTTACAAATCTAAGCTCCCTCCGAAGCCAACAGTGGAAGAGCGCATTAAAGCAACAGCAGGATATGTTGGAGGGTCCTTCGATGTTGAGTCCCTTGTGGAGAATTTACTCGGTCAACTTGCTGGAAACCAGGCAATTGTGGTACATGTATATGATGTCACAAACTCAACTAACCCCCTAATCATGTACGGAAACCAATATGAAGAAGGCGACGGGTCTCTTATCCATGAAAGCAAGCTTGATTTCGGAGATCCATACAGGAGACATCAGATGATATGTAGGTATCACCAGAAAGCACCGACAAATTGGATAGCACTTACCACGGCATCCCTATTCTTCATTATTCTTTTATTAGTCGGTTACATTTTATATGGTGCTGGGAATCATATTGTCAAAGTAGAAGATGATTTCCACGAAATGCAGGAATTGAAAGTCCGAGCAGAAGCAGCTGATGTTGCCAAGTCACAGTTTCTTGCTACTGTCTCTCATGAAATCAGAACACCAATGAACGGAATTTTAGGAATGCTTGGTCTGCTTCTAGATACAGAATTGAGTTCTACCCAAAGAGATTATGCTCAGACTGCTCAAGCATGTGGGAAGGCTCTGATAGCGTTAATAAATGAAGTGCTTGACCGGGCGAAGATTGAAGCTGGCAAATTAGAGCTTGAAGCAGTTCCGTTTGACCTTCGTTCCATACTTGATGATGTCCTTTCACTTTTTTCCGAGAAATCTAGACATAAAGGTTTAGAGCTGGCAGTGTTTGTTTCCGATAAAGTACCACATATTGTAATGGGAGATCCTGGGAGGTTCAGACAAATAATAACAAATCTTGTTGGCAACTCTGTTAAATTCACGGAACGAGGACATATATTTGTTAAAGTCCATCTTGCCGAAAATCGAAAGTCCACAATGAATGGAAAGTCTGAGTTGTTTCTAAATGGAGGACCAGATGAAGTTTTACATACTTCCGGTGGTTATCATTCCAAAACCTTAAGTGGATGTGAAGCTGCAGATGAACGGAATAGTTGGGATAATTTTAAGCATCTTATTGCTGATGAAGAATTTTTCTTTGACGCTTCAATTAAAAAGACAGCTTCGAGCGAATCCTATGAGCAAATCACCTTGATGGTGTGTGTTGAGGACACTGGAATTGGAATTCCATTCTCAGCACAAGATAGTATTTTCATGCCTTTTGTGCAAGCAGACAGCTCAACCTCTCGAAATTATGGCGGTACTGGCATTGGCTTGAGTATCAGTAAGTGCCTGGTTGAACTAATGGGTGGGAAGATAAATTTCATAAGCCGACCGCAGGTTGGAAGCACATTTTCATTTACTGCAGATTTTGGAATGTTTAACAATCCGACGACTGACGTGAAGAAACATAATTTGGAGGATCTGCCTTCTAGTTTTAGAGGGCTTAAAGCCATAGTGGTTGATGGAAAACCTGTTAGAGCTGCTGTGACTAGATACCATTTGAAGAGACTAGGTATACAAGCTAAAGTTGCAAATAACATCAATAAGGTTGTTTCTTTATGTGGGAAAAATGGTTCTTTGACCTCAGCATTATTTCAACCTGATATTATTATCGTCGAAAAGGATTCGTGGGTTTCTGGAGAGGATGGGATATTCTTCAATGTGTGGCAACTGGAGTGGAAGCAGAATGGTCATGTGTTTAAGATGCCTCAAATGATCCTTCTTGCCACGAATATCAGTAACGCTGAATTCGACAATGCGATAGCTGCAGGTTTCTCGGATACAGTGATCATGAAGCCTCTGAGAGCTAGTATGGTGGCTGCTTGTCTTCAGCAAATTCTCGGGATGGGGAAGAAGAGGCAGTTAGGGAAAGACAACACTCATGGTTCTACTTTTCTACGAAGCATTCTTTCCGGGAAGAAAGTTTTAGTTGTTGATGACAATGTGGTCAACCGGAGGGTCGCTGCAGGCGCGTTAAAGAAGTTTGGAGCTGACGTGAAGTGTGCAGAAAGTGGCAAAGCTGCTCTTGAAATTCTTCAATTGCCTCACAGTTACGATGCTTGCTTCATGGACATTCAAATGCCCGAAATGGATGGGTTTGAAGCAACGCGGCGAATTCGGAAGATGGAGAGCAAGGCAAATGAGGAGACGAATAGTGAATGTGGTGAAGAAGGAAATGGCCTGAAAAGTGAGTTCCATATTCCGATATTGGCCATGACAGCGGATGTAATCCATGCAACATACGACGAGTGCTTGAAATGTGGGATGGATGGATATGTCTCAAAGCCCTTTGAGGAAGAGAATCTCTATCAAGAAGTTGCAAGGTTTTTCATGACCAAACCAATCTTAAACTCATAA 3210 0.4212 MGFGLNLNQREEKQKNKIFWPIIHHAWFLCFSFSFLRHEGFRKGTRRVKYSRQEEKLSIDNLLLMGLSLKMQIHQHPLALRMHEQSGNKGKYTFIQAHRAWLSKFLLFWIMLMALTSWCIYSNMDADTKVRRREVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRSPSAIDQETFTEYTARTAFERPLLSGVAYAQRVVNSERERFEKRHGWVIKTMQREPSQIRDEYAPVIFAQETVSYLESIDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPKPTVEERIKATAGYVGGSFDVESLVENLLGQLAGNQAIVVHVYDVTNSTNPLIMYGNQYEEGDGSLIHESKLDFGDPYRRHQMICRYHQKAPTNWIALTTASLFFIILLLVGYILYGAGNHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLDTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPHIVMGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAENRKSTMNGKSELFLNGGPDEVLHTSGGYHSKTLSGCEAADERNSWDNFKHLIADEEFFFDASIKKTASSESYEQITLMVCVEDTGIGIPFSAQDSIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGKINFISRPQVGSTFSFTADFGMFNNPTTDVKKHNLEDLPSSFRGLKAIVVDGKPVRAAVTRYHLKRLGIQAKVANNINKVVSLCGKNGSLTSALFQPDIIIVEKDSWVSGEDGIFFNVWQLEWKQNGHVFKMPQMILLATNISNAEFDNAIAAGFSDTVIMKPLRASMVAACLQQILGMGKKRQLGKDNTHGSTFLRSILSGKKVLVVDDNVVNRRVAAGALKKFGADVKCAESGKAALEILQLPHSYDACFMDIQMPEMDGFEATRRIRKMESKANEETNSECGEEGNGLKSEFHIPILAMTADVIHATYDECLKCGMDGYVSKPFEEENLYQEVARFFMTKPILNS 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0941 1069 CDD HATPase_EvgS-ArcB-TorS-like 563 741 - -
Lal15g0941 1069 PRINTS Bacterial sensor protein C-terminal signature 668 682 IPR004358 GO:0016310|GO:0016772
Lal15g0941 1069 PRINTS Bacterial sensor protein C-terminal signature 686 696 IPR004358 GO:0016310|GO:0016772
Lal15g0941 1069 PRINTS Bacterial sensor protein C-terminal signature 703 721 IPR004358 GO:0016310|GO:0016772
Lal15g0941 1069 PRINTS Bacterial sensor protein C-terminal signature 727 740 IPR004358 GO:0016310|GO:0016772
Lal15g0941 1069 Gene3D - 420 509 - -
Lal15g0941 1069 Gene3D - 902 1061 - -
Lal15g0941 1069 CDD REC_hyHK_CKI1_RcsC-like 936 1057 - -
Lal15g0941 1069 SMART CHASE_2 173 358 IPR006189 -
Lal15g0941 1069 ProSiteProfiles CHASE domain profile. 173 385 IPR006189 -
Lal15g0941 1069 SMART HisKA_10 446 511 IPR003661 GO:0000155|GO:0007165
Lal15g0941 1069 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 558 741 IPR003594 -
Lal15g0941 1069 Pfam Response regulator receiver domain 926 995 IPR001789 GO:0000160
Lal15g0941 1069 ProSiteProfiles Response regulatory domain profile. 925 1061 IPR001789 GO:0000160
Lal15g0941 1069 ProSiteProfiles Response regulatory domain profile. 767 898 IPR001789 GO:0000160
Lal15g0941 1069 Gene3D - 510 745 IPR036890 -
Lal15g0941 1069 ProSiteProfiles Histidine kinase domain profile. 453 743 IPR005467 -
Lal15g0941 1069 Coils Coil 496 516 - -
Lal15g0941 1069 SMART HKATPase_4 558 743 IPR003594 -
Lal15g0941 1069 Pfam His Kinase A (phospho-acceptor) domain 446 511 IPR003661 GO:0000155|GO:0007165
Lal15g0941 1069 PANTHER HISTIDINE KINASE 4 87 1064 - -
Lal15g0941 1069 Gene3D - 124 176 - -
Lal15g0941 1069 CDD HisKA 446 507 IPR003661 GO:0000155|GO:0007165
Lal15g0941 1069 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 432 512 IPR036097 GO:0000155|GO:0007165
Lal15g0941 1069 SUPERFAMILY CheY-like 763 899 IPR011006 -
Lal15g0941 1069 Gene3D CHASE domain 177 392 IPR042240 -
Lal15g0941 1069 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 500 738 IPR036890 -
Lal15g0941 1069 SUPERFAMILY CheY-like 922 1060 IPR011006 -
Lal15g0941 1069 Gene3D - 761 901 - -
Lal15g0941 1069 SMART REC_2 924 1057 IPR001789 GO:0000160
Lal15g0941 1069 PANTHER TWO-COMPONENT HISTIDINE KINASE 87 1064 - -
Lal15g0941 1069 Pfam CHASE domain 176 356 IPR006189 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0941 Lal-Chr15 7286916 7293149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0941 76 1066 Histidine Kinase Gene Family AT2G01830 69.483 0.0 1384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal15g0941 HATPase_c 1.1e-30 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0941 15 7286916 7293149 Lal15g0941 15 7286916 7293149 ECH
Lal16g0967 16 6419220 6426076 Lal15g0941 15 7286916 7293149 LSH