Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1462 ATGGCCAACTCTAACCTCCCTCGAAGAATCATCAAGGAAACGCAGCGTTTGCTTAGTGAACCAGCACCTGGAATTAGCGCTTCGCCTTCAGAAGAAAATATGCGATATTTCAATGTGATGATCCTTGGCCCATCCCAGTCACCTTATGAAGGAGGGGTTTTCAAGTTAGAACTATTCTTGCCAGAAGAATATCCAATGGCTGCTCCGAAGCTTGGCAGGATATGTCTTGATATTCTGAAAGATAAGTGGAGCCCTGCCCTTCAAATACGCACTGTGCTTTTGAGTATTCAAGCCCTTTTAAGTGCACCAAACCCAGATGATCCACTTTCTGAGAACATTGCTAAGCATTGGAAAAGTAATGAGGTGGAGGCTGTTGAAACAGCAAGGGAATGGACCCGATTATATGCTAGTGGTGCCTGA 420 0.45 MANSNLPRRIIKETQRLLSEPAPGISASPSEENMRYFNVMILGPSQSPYEGGVFKLELFLPEEYPMAAPKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEVEAVETAREWTRLYASGA 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1462 139 PANTHER BNAA07G38410D PROTEIN 2 136 - -
Lal11g1462 139 SUPERFAMILY UBC-like 7 137 IPR016135 -
Lal11g1462 139 CDD UBCc 7 132 IPR000608 -
Lal11g1462 139 Gene3D Ubiquitin Conjugating Enzyme 1 70 IPR016135 -
Lal11g1462 139 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 137 IPR000608 -
Lal11g1462 139 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 136 - -
Lal11g1462 139 Pfam Ubiquitin-conjugating enzyme 9 131 IPR000608 -
Lal11g1462 139 SMART ubc_7 8 137 - -
Lal11g1462 139 Gene3D Ubiquitin Conjugating Enzyme 71 137 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1462 Lal-Chr11 17917286 17922083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1462 8 104 Miscellaneous Gene Families AT3G17000 29.204 5.72e-11 57.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1462 11 17917286 17922083 Lal11g1462 11 17917286 17922083 ECH
Lal20g0372 20 2985872 2989742 Lal11g1462 11 17917286 17922083 LSH
Lal11g1462 11 17917286 17922083 Lal2g0631 2 3751747 3755813 PCT
Lal11g1462 11 17917286 17922083 Lal9g0547 9 3698011 3702669 PCT
Lal2g0631 2 3751747 3755813 Lal11g1462 11 17917286 17922083 PCT
Lal9g0547 9 3698011 3702669 Lal11g1462 11 17917286 17922083 PCT