Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1461 ATGTCACATTTGGGTAACCCCATTTCCGATGAGTTCGGCGAGTTCAACAAACCAGATTTCCGAGAACTCGATCTGGGTTCGCCGGTTTCACCATTACGGAACCGTGGACCCGCTATAAGTAGTAGCTCAAGTTCCTCTGGATCCTTCTCTGGTGGAAGAACCGTGCAAAATCCACTTCCTAAAAGATCCGAATCTGCACCTACTATTATTAATACCAACCACGCCGGTGAACTTTCCGGTTCAACTGAGAACAGTCCAACTAATCCACGTGGTGGCACCGGTTCTAATCCAGGTCATGCAAGATCCAGTTCTGGATCCGCTTCACCGTTAATCTATTCCGGTCAGAGTGTGAATTCGCCGGTTTTGAATGTTCTACCAACCGGAAACATATGCCCCTCTCGCCGGATTGTTAAAACCGGCATGGCTTCAAATCGGAGCACTAGGAGTGATGTATTGGGCACTGGCACTGGGAATTATGGCCATGGGAGCATAATGCGTGGTGGGAAAGAGGTTTCGGGTTCGGGGAATGTGAATGAGATGGTAAAGAGAGGGGTGCAGAGTTTGGATCCGGAGGAGTTGAAGAGAGTAGGGAATGAGCATTACAAAAGGGGGCATTTTCTGGAGGCTTTGAGCTTGTATGACAAGGCAATTGCTTTGTCGCCGGGGAGTGCCGCTTACCGGAGCAATCGGGCCGCGGCGTTGACGGGTTTAGGAAGGTTGGTTGAGGCAGTGAGGGAGTGTGAGGAGGCTGTGAGTTTGAATCCTAATTATGGCAGGGCTCTTTATCGTTTGGCAACTCTTTTTATCAGGCTAGGTCAAGTTGAGAATGCCAGGAAACATTTATCTCATCCTGGGGTGCAGTCGGATCCATCTGAGATGCGTAAGTTGCAAATGGTGGAAAAGCATATAACCAAATGTGCAGACGGAAGGAGGATAGGAGATTGGAAAAGTGTTCTGAGGGAAGTTGATGCTGCTATTGCTTCTGGAGCGGACTCTTCTCCTCAGCTCTTTATGTGTAGAGCTGAAGCCCTTTTGAAGCTACACCAAATTGATGATGCAGAATCAACTTTGTCATATTCTCCCAAATCAGAATGGCATACTAATTCCACTTCACAAGCAAGATTTTTCGGGATGCTTTCTGAAGCTTATTCCTACTTTATTAGAGCTCAGATTGAGATGGTATTGGGAAGGTTTGAGAATGCAGTTGCAGCAGCAGAGAAAGCCTGTCAGATTGATTCCCGAAATGTTGAAGTTGCTGTCTTGCTCAACAATGTAAGAATGGTAACAAGAGCTCGAATGCGTGGCAACGATCTTTTTAAATCTGAAAGGTTTACTGAAGCTTGCTCGGCATATGGGGAAGGTTTGAAGCTGGACCCTTCAAATTCCGTTTTATATTGCAATAGAGCAGCTTGTTGGTTTAAGCTTGGACAATGGGAAAGATCAATTGAAGACTGCAATCAAGCTTTACTTATTCAACCAAACTACACAAAAGCTCTTCTTCGAAGGGCAGCCTCAAACAGCAAGCTTGAAAGGTGGGAAGAAGCTGTCAAAGATCATGAGGTATTGCGGAAAGACCATCCAAATGACGATGATGTTGCTGAAGCTCTTTTTCATGCACAAATTGCACTGAAGAAATCATGTGGCGAAGAAGTGTATAATTTAAAATTTGGTGGTGAAGTGGAAGAAGTATCAAGTCTTGAGCAGTTTAGAGCTGCAATATCTTTACCAGGTGTTTCTATTGTCCATTTTGAAATTGCATCGAACTCGCAATGCAAGCAAATATCACCATTTGTCGATACACTATGTGGTCGCTATCCATCTATTAACTTCCTCAAGGTGGATATTCAACGAAGTCCAACAATTGCCACCGCTGAGAATGCTAAGGTTGTGCCAACCTTCAAGATATACAAAAACGGAAATCGAGTGAAGGAAATCTTATGCCCTAGTCGCGATATGTTGGAACACTCTGTGAGGCATTACAGCTTATAA 1989 0.449 MSHLGNPISDEFGEFNKPDFRELDLGSPVSPLRNRGPAISSSSSSSGSFSGGRTVQNPLPKRSESAPTIINTNHAGELSGSTENSPTNPRGGTGSNPGHARSSSGSASPLIYSGQSVNSPVLNVLPTGNICPSRRIVKTGMASNRSTRSDVLGTGTGNYGHGSIMRGGKEVSGSGNVNEMVKRGVQSLDPEELKRVGNEHYKRGHFLEALSLYDKAIALSPGSAAYRSNRAAALTGLGRLVEAVRECEEAVSLNPNYGRALYRLATLFIRLGQVENARKHLSHPGVQSDPSEMRKLQMVEKHITKCADGRRIGDWKSVLREVDAAIASGADSSPQLFMCRAEALLKLHQIDDAESTLSYSPKSEWHTNSTSQARFFGMLSEAYSYFIRAQIEMVLGRFENAVAAAEKACQIDSRNVEVAVLLNNVRMVTRARMRGNDLFKSERFTEACSAYGEGLKLDPSNSVLYCNRAACWFKLGQWERSIEDCNQALLIQPNYTKALLRRAASNSKLERWEEAVKDHEVLRKDHPNDDDVAEALFHAQIALKKSCGEEVYNLKFGGEVEEVSSLEQFRAAISLPGVSIVHFEIASNSQCKQISPFVDTLCGRYPSINFLKVDIQRSPTIATAENAKVVPTFKIYKNGNRVKEILCPSRDMLEHSVRHYSL 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1461 662 Pfam Tetratricopeptide repeat 383 413 IPR019734 GO:0005515
Lal11g1461 662 Gene3D Glutaredoxin 555 661 - -
Lal11g1461 662 Pfam Tetratricopeptide repeat 238 282 - -
Lal11g1461 662 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 14 660 IPR044534 -
Lal11g1461 662 MobiDBLite consensus disorder prediction 141 175 - -
Lal11g1461 662 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 14 660 - -
Lal11g1461 662 MobiDBLite consensus disorder prediction 1 112 - -
Lal11g1461 662 SUPERFAMILY TPR-like 189 417 IPR011990 GO:0005515
Lal11g1461 662 Pfam Thioredoxin 567 646 IPR013766 -
Lal11g1461 662 MobiDBLite consensus disorder prediction 141 156 - -
Lal11g1461 662 CDD TRX_family 567 645 - -
Lal11g1461 662 Gene3D Tetratricopeptide repeat domain 189 547 IPR011990 GO:0005515
Lal11g1461 662 SMART tpr_5 258 292 IPR019734 GO:0005515
Lal11g1461 662 SMART tpr_5 224 257 IPR019734 GO:0005515
Lal11g1461 662 SMART tpr_5 462 495 IPR019734 GO:0005515
Lal11g1461 662 SMART tpr_5 382 415 IPR019734 GO:0005515
Lal11g1461 662 SMART tpr_5 428 461 IPR019734 GO:0005515
Lal11g1461 662 SMART tpr_5 496 529 IPR019734 GO:0005515
Lal11g1461 662 SMART tpr_5 190 223 IPR019734 GO:0005515
Lal11g1461 662 SUPERFAMILY TPR-like 432 545 IPR011990 GO:0005515
Lal11g1461 662 Pfam Tetratricopeptide repeat 464 495 IPR001440 GO:0005515
Lal11g1461 662 ProSiteProfiles TPR repeat profile. 190 223 IPR019734 GO:0005515
Lal11g1461 662 SUPERFAMILY Thioredoxin-like 562 646 IPR036249 -
Lal11g1461 662 MobiDBLite consensus disorder prediction 34 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1461 Lal-Chr11 17911908 17915954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1461 427 498 U-box Gene Family AT3G07370 38.889 6.24e-09 55.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1461 11 17911908 17915954 Lal11g1461 11 17911908 17915954 ECH
Lal20g0371 20 2977423 2982496 Lal11g1461 11 17911908 17915954 LSH
Lal11g1461 11 17911908 17915954 Lal1g1620 1 18612298 18616289 LSH
Lal11g1461 11 17911908 17915954 Lal1g0598 1 3831347 3835015 PCT
Lal11g1461 11 17911908 17915954 Lal9g0546 9 3691734 3695475 PCT