Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1451 ATGGATCAGATAACGGATTCGGAAATGGATCAACGGAGGCAAGGATATTTCCATTCTGAGCCCAGTATCATTTCGAGAGGCCTCGTTAGTACCTCACAGCCGAATATTCGCACAATGGTGGCAGCTTCAGGGACCACAACTAATGTCAATTCCAACTATTTACAAGATGTTTATGACAATACTGGGGTGCATGGCTTGGCACAATACAATGGCATTCAGCCTCAACATAATCTTGACATGGGTGGTGCAGCTGCAGCCAGCATATATTATTCCGGCATGAATCCTTCTTCTAGTACTGGCGTGTTTACCACTTTACCTCTAAATCAGCAAGCCTATGATCAATTGCCTGGTTCAAGCACATTTGCGATCTCTGGAGGTTCTTCAGCTAGTTTTGGAGGAAACAGTAGTTTCATGGATGATGTCAGAGGTCCATACAAAAGGAAAATTGCTGAAGGGATAAGAGGAAATCATCAGTATTTTAATGCTTCAGCTAGTTCTTCCATCGCTCCCCCTAATGCGAGACACGCAGATGGGATTGCTATGGACACTGCATCGTTTTCCTTGCACATGCCTTCACTTGTGGAAGTAGGACAACATGGTAGTGGATGGAACAGGTCAGGTGAGTCTATTATTTTGCATGACCACAACCATTTGATTCGAGGAAACTACTTAGGTCAGCACTTTCCGCCAGCTCCTCCTCCATGGTTTGACCAGCAGTTAAACAATGATGGCCATACTACAGCCTGGAATCAGCCTCTTCCAATGACTTATATGCAAGCACCAAATGTTAATGGAAGTTCATTAGAGAATGCAAGTATGGGCTTGCAGAGATATCATGATACAGCCAACAACAGAAATGGCCTAAGGTTTCCTTATCCCCCTCCTGCCAACCACCCACACCATAATTATCATCATCTGGCACTACCTATGCAAGGAGTAAGAGGTCATGCTATCAACTTTCGCCCTCCGGTAACTGCAGCTTCATTTGGCGTTCCTACAAATCCTTCACGCGGTGATGTGATCCCCCCACAGACTGGGTTTGAGATGATTCCTAGGCATGTTGGTCCTGTACCATCAGCAGGCCTAAGGATATACCGACCTCACAGAGCAATCATTCCCGATACAACTCTCGGACATAGAAATCTTCCCCCCATGGGCTTTCTCCGAGTTGATGATGGTGCTTTAATTGATGAAGTGGGAAATTTGGTTGACCATCACAGAGATATGCGCTTGGACATCGAGGATATGTCTTATGAGGCAAGTACACAAGATCTTCTTGCGTTGGGTGAGCGGATTGGCAAAGTAAGCACTGGTTTGTCAGAGGAAACAATTACAGCTCAATTGAAGAAGAAGAATTATTTAACACCTGCTACCGCTATTAATTTGGAGGAGGAAGTTTCCGATGATCAGGAATCTGATTCTTGTATGATATGTCAGGATGAATATAAGGAGGAAGAGAAGATTGGAGTTCTTGGATGTGAGCATGAATATCATGCAGATTGCTTAACAAAATGGTTGCTTGTCAAAAATGTATGTCCGATATGCAAATCAGAAGCCTTGACTCCTGGAATGAAGGACATATAA 1584 0.4413 MDQITDSEMDQRRQGYFHSEPSIISRGLVSTSQPNIRTMVAASGTTTNVNSNYLQDVYDNTGVHGLAQYNGIQPQHNLDMGGAAAASIYYSGMNPSSSTGVFTTLPLNQQAYDQLPGSSTFAISGGSSASFGGNSSFMDDVRGPYKRKIAEGIRGNHQYFNASASSSIAPPNARHADGIAMDTASFSLHMPSLVEVGQHGSGWNRSGESIILHDHNHLIRGNYLGQHFPPAPPPWFDQQLNNDGHTTAWNQPLPMTYMQAPNVNGSSLENASMGLQRYHDTANNRNGLRFPYPPPANHPHHNYHHLALPMQGVRGHAINFRPPVTAASFGVPTNPSRGDVIPPQTGFEMIPRHVGPVPSAGLRIYRPHRAIIPDTTLGHRNLPPMGFLRVDDGALIDEVGNLVDHHRDMRLDIEDMSYEASTQDLLALGERIGKVSTGLSEETITAQLKKKNYLTPATAINLEEEVSDDQESDSCMICQDEYKEEEKIGVLGCEHEYHADCLTKWLLVKNVCPICKSEALTPGMKDI 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1451 527 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 131 524 IPR045191 GO:0061630
Lal11g1451 527 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 131 524 - -
Lal11g1451 527 ProSiteProfiles Zinc finger RING-type profile. 475 516 IPR001841 -
Lal11g1451 527 Pfam Ring finger domain 473 516 IPR001841 -
Lal11g1451 527 SMART ring_2 475 515 IPR001841 -
Lal11g1451 527 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 437 520 IPR013083 -
Lal11g1451 527 SUPERFAMILY RING/U-box 469 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1451 Lal-Chr11 17840815 17845129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1451 388 520 C3H Transcription Factor Family AT2G15530 44.604 4.04e-34 135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1451 11 17840815 17845129 Lal11g1451 11 17840815 17845129 ECH
Lal20g0355 20 2853330 2857399 Lal11g1451 11 17840815 17845129 LSH
Lal11g1451 11 17840815 17845129 Lal1g1630 1 18713975 18718271 LSH
Lal11g1451 11 17840815 17845129 Lal1g0585 1 3749806 3754926 PCT
Lal1g0585 1 3749806 3754926 Lal11g1451 11 17840815 17845129 PCT