Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2152 ATGCAGTTGAATAATGCAAAAATGGCCATTCTTCTTACCATGCTTGTAATTTTTATTCTACTATTTTTGTCCTGTGATAGTACCACTCTCACCATCACCCAGTTTCAGCCACTTTCTGATGGAACCACCTTGGTTTCCAAAGATGGAACCTTTGAGGTTGGTTTCTTCAGCCCAGGTAGTTCCACAAACCGCTACCTAGGAATCTGGTTCAAAAACATCCCTATAAAAACCGTCGTTTGGGTAGCCAACCACGACAACCCAATCAACACCACCACCACTCCCACCAAGTTAACCATAACCAAAGAAGGAAACCTTGCACTTCTCAACAAGAACAACAGCGTTATTTGGTCAGCAAACACAACAACAGCAAAAGCGACCAACGTTGTAGCACAGCTCTTGGACACAGGAAACTTGGTCCTACAAGATGAAAAAGAAATAAATTCTCAGAACTACTTGTGGCAGAGCTTTGACCATCCCTCAGATACAATTTTACCAGGAATGAAGATAGGTTGGAAAGTAACAACAAAGGGTCTTCATCTTAATCGCTACATCACTGCATGGAACAATTGGGAAGACCCATCTTCTGCTAACTTCACTTATAGCGTGTCAAGAAGCAACATTCCTGAATTACAACAATGGAATGGCTCAACGATGTTATATAGAAGTGGCCCTTGGAATGGTATTCGATTCAGCGCTACACCCTCGTTGAAACACCATCCATTGTTCACTTACAATTTCGTGTACGACACGGAAGAGTGTTATTTCCAATTCTACCCCCGGAATAGCTCGTTGATTTCCAGAATTGTTCTCAACCGAACCCTTTATGCTCTTCAGCGCTTCATTTGGGTTGAGGAAAGTAACAAATGGGAGTTGAGTTTAACTGTTCCGAGGGATGGTTGTGATGGGTATAACCATTGTGGCTCATTTGGGTACTGTGGCAGTGCCACTGTGTCTTCTATGTGTGAGTGTTTGCGTGGGTTTGAGCCAAAATCGCCGCAAAACTGGGGTGCGAAGAATTGGAGTGAAGGGTGTGTGCCTAATAGTAAAAGTTGGAGGTGTAAGGAGAAAAACAAAGACGGTTTCGTCAAGTTTAGTAACATGAAGGTTCCAGACACTAACACGTCTTGGATTAATAGAAGCATGACACTTGAGGAATGCAAGGAAAAGTGTTGGGAAAATTGTTCGTGTACGGCTTATGGTAGCTCCGACATCCTTGGAAAGGGAAATGGTTGTATCCTTTGGTTTGGTGATCTATTGGACTTGAGACTGCTTCCCGATGCAGGGCAAGATCTGTATGTTAGAGTGCATATCACCGAAATTATGGGTGGTTCAAGGAAAGTGGCCATTGTGGTCCCATGTATTGTTTCATCTGTTATTGCGATGATTGTAATTTTCTCATTTGTTTACTGGAGAACTAAAACAAAATTCGGAGGCAAAGTGAAAATAAATGAGAGCAAAGAAGAAGAAATAGAACTACCTTTGTTTGACTTTGATACAATAGCGTGTGCCACTAATCACTTTTCAAGTGACAACAAGGTTAGCCAAGGTGGTTTTGGTCCTGTATATAAAGGCACACTACTAGATGGACAGGAAATTGCTGTCAAAAGGCTCTCACACACATCAGCACAAGGTTTAACAGAATTTAAGAATGAAGTTAATTTTTGTTCTAAACTTCAACATCGAAATCTTGTTAAAGTTCTTGGTTGTTGCATCGATGAGCAAGAGAAATTACTCATCTATGAATACATGTCCAACAAAAGTCTAGACTTCTTTCTTTTTGATTCTTCTCAAAGCAAACTCTTAGATTGGCCCATGCGATTTAGCATTATAAATGGAATTGCTCGAGGACTTCTTTATCTTCACCAAGATTCTAGATTAAGGATCATACACAGAGATTTGAAAGCAAGTAATATTTTGCTTGATAATGACATGAATCCAAAAATTTCGGATTTTGGATTAGCCCGAATGTGTAGAGGTGAACAAATTGAAGGGAACACAAGAAGAATTGTTGGTACATATGGTTATATGGCACCAGAATATGCAATTGATGGAGTATTCTCCATCAAATCCGATGTTTATAGCTTCGGTGTTTTACTACTGGAGGTTTTAAGCGGAAAGAAAAACAAAGGATTTTCCTACTCAAACAACAGTTATAATCTTATTGCACATGCATGGAGGTTGTGGAAAGAGTGCATCCCAATGGAATTTATTGATACTTGTTTGGGGGACTCATACACTCAATCTGAAGCCTTACAGTGCATTCATATTGGTCTTTCATGCGTGCAACATCAACCTGATGATAGACCAAATATGAGATCTATAATTGCAATGTTAACAAGTGAAAGTGTGTTGCCACAACCAAAAGAACCTATTTTCTTAACAGAAAATGTTTCAGCTGAGGATGATCTTGGACAAATGGTGAACTACTCAACCAATGAAGTAACTATGTCCGGGATGGAACCAAGATAA 2469 0.3998 MQLNNAKMAILLTMLVIFILLFLSCDSTTLTITQFQPLSDGTTLVSKDGTFEVGFFSPGSSTNRYLGIWFKNIPIKTVVWVANHDNPINTTTTPTKLTITKEGNLALLNKNNSVIWSANTTTAKATNVVAQLLDTGNLVLQDEKEINSQNYLWQSFDHPSDTILPGMKIGWKVTTKGLHLNRYITAWNNWEDPSSANFTYSVSRSNIPELQQWNGSTMLYRSGPWNGIRFSATPSLKHHPLFTYNFVYDTEECYFQFYPRNSSLISRIVLNRTLYALQRFIWVEESNKWELSLTVPRDGCDGYNHCGSFGYCGSATVSSMCECLRGFEPKSPQNWGAKNWSEGCVPNSKSWRCKEKNKDGFVKFSNMKVPDTNTSWINRSMTLEECKEKCWENCSCTAYGSSDILGKGNGCILWFGDLLDLRLLPDAGQDLYVRVHITEIMGGSRKVAIVVPCIVSSVIAMIVIFSFVYWRTKTKFGGKVKINESKEEEIELPLFDFDTIACATNHFSSDNKVSQGGFGPVYKGTLLDGQEIAVKRLSHTSAQGLTEFKNEVNFCSKLQHRNLVKVLGCCIDEQEKLLIYEYMSNKSLDFFLFDSSQSKLLDWPMRFSIINGIARGLLYLHQDSRLRIIHRDLKASNILLDNDMNPKISDFGLARMCRGEQIEGNTRRIVGTYGYMAPEYAIDGVFSIKSDVYSFGVLLLEVLSGKKNKGFSYSNNSYNLIAHAWRLWKECIPMEFIDTCLGDSYTQSEALQCIHIGLSCVQHQPDDRPNMRSIIAMLTSESVLPQPKEPIFLTENVSAEDDLGQMVNYSTNEVTMSGMEPR* 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2152 822 Pfam D-mannose binding lectin 77 187 IPR001480 -
Gso6g2152 822 ProSiteProfiles PAN/Apple domain profile. 353 436 IPR003609 -
Gso6g2152 822 Pfam Protein tyrosine and serine/threonine kinase 510 777 IPR001245 GO:0004672|GO:0006468
Gso6g2152 822 SMART serkin_6 507 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2152 822 Gene3D Phosphorylase Kinase; domain 1 470 582 - -
Gso6g2152 822 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 21 820 - -
Gso6g2152 822 CDD STKc_IRAK 513 779 - -
Gso6g2152 822 Pfam PAN-like domain 353 421 IPR003609 -
Gso6g2152 822 ProSiteProfiles Protein kinase domain profile. 507 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2152 822 SMART ntp_6 356 435 IPR003609 -
Gso6g2152 822 CDD B_lectin 36 159 IPR001480 -
Gso6g2152 822 SUPERFAMILY Protein kinase-like (PK-like) 492 796 IPR011009 -
Gso6g2152 822 ProSiteProfiles Bulb-type lectin domain profile. 29 153 IPR001480 -
Gso6g2152 822 Gene3D Hepatocyte Growth Factor 353 428 - -
Gso6g2152 822 Gene3D Transferase(Phosphotransferase) domain 1 583 788 - -
Gso6g2152 822 CDD PAN_AP_plant 354 435 - -
Gso6g2152 822 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Gso6g2152 822 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 192 IPR036426 -
Gso6g2152 822 PIRSF SRK 2 822 IPR024171 GO:0004674
Gso6g2152 822 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 21 820 - -
Gso6g2152 822 SMART blect_4 35 159 IPR001480 -
Gso6g2152 822 Gene3D - 24 156 IPR036426 -
Gso6g2152 822 Pfam S-locus glycoprotein domain 220 331 IPR000858 GO:0048544
Gso6g2152 822 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2152 Gso-Chr6 41190412 41195385 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2152 447 793 Receptor kinase-like Gene Family AT4G23190 52.707 2.38e-125 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso6g2152 PK_Tyr_Ser-Thr 9.1e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2152 6 41190412 41195385 Gso6g2152 6 41190412 41195385 ECH