Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2151 ATGGCCTTTTTTGCTATCCTGATTCTTGTCAGCAAGCTATTGTTATTCTTCCCTAAATTTTCAGCCGCAACAGATACCATTACCCAGTTTGAGCCACTCGAAGATAACACGACTTTGGTTTCAAAAGGTGGAACTTTTGAGTTGGGTTTCTTCACCCCAGCTAGTATTTCCTCCAACCGCTATCTCGGAATCTGGTACAAAAGCATACCAATCAGAACCGTGGTTTGGGTTGCCAACCGTGACAATCCAATCAAAGACAACTCCACCGAGTTAGCCATAACCACAGAGGGCAACCTCGTACTTCTCAACCCAAACAACAACATCGTTATTTGGTCGACAAACACTACAACAAAAGCATCCGTTGTGGTAGCACAGTTGTTAGACTCGGGCAACTTGGTCCTAAGAGACGAGAAAGACACCGATCCTGAAAACTACTTGTGGCAGAGCTTTGACTATCCTTCAGACACGTTTCTACCTGGAATGAAAGCAGGGTGGGACTTGAAGAAAGGCCTCAATAGGGTCCTAACAGCTTGGAAAAACTGGGATGACCCTTCTTCAGGGGACTTTAGAGACATTGCTTTACATACCAATTATCCTGAAGAGGTTATGTTGAAAGGCACAACAAAGTACTGGAGAAGTGGCCCGTGGGATGGAACGAAATTCAGTGGTAACCCCTCCGTGCCATCCAACGCAATCGTAAACTACACGGTTGTGTCAAACAACGATGAATTTTACGCTATGTATAGCATGACCGATAAGTCAGTGATTTCACGAATCATAATGAATCAAACACTTTATGTTCGTCAGCGTCTGACATGGAATACCGACAGCCAAATGTGGAGGGTGTCTTCAGAGTTGCCGGGTGATTTATGCGACCGCTATAACACTTGTGGCGCATTTGGGATTTGTGACCTTAGTGAGGCACCAGTGTGCAAGTGTTTAGATGGATTCAAGCCAAAATCGCCCCGAAATTGGACACAAATGAACTGGAATCAGGGGTGCGTGCACAACCAAACTTGGAGCTGCAGAGAGAAGAATAAGGATGGTTTTAAGAAATTCAGTAACGTGAAGGCACCAGACACTGAAAGATCTTGGGTTAATGCAAGTATGACACTTGAGGAATGCAAGCACAAATGTACGGAAAACTGTTCCTGTATGGCCTATGCAAATTCAGATATCAGGGGAGAAGGTAGTGGTTGTGCCATTTGGTTTGGTGATCTGTTAGATATAAGACTGATGTCAAATGCTGGACAAGATCTGTACATTAGATTGGCGATGTCTGAAACAGCTCATCAAAATCAAGATGAGAAAGATAGTTCAAAGAAAAAGGTGGTTGTGATTGCAAGCAGCATTTCATCTGTAATTGCTATGCTACTAATTTTCATATTCATTTACTGGAGGTACACAAATAAAAATAACGTTTGGGTGAAAACAGAGATCGAAGGAACGAAGAATCAAAGCCAACAAGAAGACTTTGAGCTACCTTTATTTGACCTTGCCTCTATAGCACATGCCACAAGTAACTTCTCAAATGACAAGAAACTTGGTGAAGGTGGTTTTGGGCCTGTATACAAGGGAACATTACCAAATGGACAAGAGGTCGCTGTTAAGAGGCTTTCACAAACATCTAGACAAGGATTAAAAGAATTTAAGAATGAGGTTATGTTATGTGCCGAACTCCAACATCGAAATCTTGTTAAAGTTCTTGGATGTTGCATACAAGATGATGAGAAATTGCTCATATACGAATATATGGCTAACAAAAGCTTAGACGTCTTTCTTTTTGATTCTAGTCAAAGTAAACTTCTTGATTGGCCTATGCGTTTCGGCATTATAAATGGAATAGCTCGGGGATTACTCTATCTTCATCAAGACTCAAGACTAAGGATCATACATAGAGATCTTAAGGCAAGTAATGTTTTATTGGATAATGAAATGAATCCAAAAATTTCAGATTTTGGTTTGGCTCGAATGTGTGGAGGTGATCAAATTGAAGGGGAAACGAGCAGAGTAGTTGGTACATATGGTTATATGGCACCTGAATATGCCTTTGATGGAATATTTTCCATTAAATCGGATGTGTTTAGTTTTGGCGAACTATTGCTAGAGATAGTAAGCGGCAAGAAAAATAGCAGACTCTTCTATCCAAATGACTACAATAATCTCATTGGCCATGCATGGATGTTATGGAAAGAGGGAAATCCAATGCAATTCATTGACACTAGTTTGGAGGACTCATGCATTTTATATGAGGCCTTGCGTTGCATTCATATTGGTCTTTTATGTGTGCAACATCATCCTAATGATAGGCCAAACATGGCATCTGTGGTCGTATTATTGAGCAACGAGAATGCATTGCCTCTACCAAAGGATCCTAGCTACTTAAGCAATGACATCTCAACTGAAAGAGAATCTTCCTTTAAGAACTTTACGTCTTTTTCTATTAATGATGTCACTATGTCAATGATGAGTGCTAAATAG 2481 0.4079 MAFFAILILVSKLLLFFPKFSAATDTITQFEPLEDNTTLVSKGGTFELGFFTPASISSNRYLGIWYKSIPIRTVVWVANRDNPIKDNSTELAITTEGNLVLLNPNNNIVIWSTNTTTKASVVVAQLLDSGNLVLRDEKDTDPENYLWQSFDYPSDTFLPGMKAGWDLKKGLNRVLTAWKNWDDPSSGDFRDIALHTNYPEEVMLKGTTKYWRSGPWDGTKFSGNPSVPSNAIVNYTVVSNNDEFYAMYSMTDKSVISRIIMNQTLYVRQRLTWNTDSQMWRVSSELPGDLCDRYNTCGAFGICDLSEAPVCKCLDGFKPKSPRNWTQMNWNQGCVHNQTWSCREKNKDGFKKFSNVKAPDTERSWVNASMTLEECKHKCTENCSCMAYANSDIRGEGSGCAIWFGDLLDIRLMSNAGQDLYIRLAMSETAHQNQDEKDSSKKKVVVIASSISSVIAMLLIFIFIYWRYTNKNNVWVKTEIEGTKNQSQQEDFELPLFDLASIAHATSNFSNDKKLGEGGFGPVYKGTLPNGQEVAVKRLSQTSRQGLKEFKNEVMLCAELQHRNLVKVLGCCIQDDEKLLIYEYMANKSLDVFLFDSSQSKLLDWPMRFGIINGIARGLLYLHQDSRLRIIHRDLKASNVLLDNEMNPKISDFGLARMCGGDQIEGETSRVVGTYGYMAPEYAFDGIFSIKSDVFSFGELLLEIVSGKKNSRLFYPNDYNNLIGHAWMLWKEGNPMQFIDTSLEDSCILYEALRCIHIGLLCVQHHPNDRPNMASVVVLLSNENALPLPKDPSYLSNDISTERESSFKNFTSFSINDVTMSMMSAK* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2151 826 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 32 819 - -
Gso6g2151 826 SMART ntp_6 345 424 IPR003609 -
Gso6g2151 826 Pfam D-mannose binding lectin 73 179 IPR001480 -
Gso6g2151 826 CDD STKc_IRAK 515 777 - -
Gso6g2151 826 SUPERFAMILY Protein kinase-like (PK-like) 492 798 IPR011009 -
Gso6g2151 826 SMART blect_4 30 153 IPR001480 -
Gso6g2151 826 ProSiteProfiles PAN/Apple domain profile. 342 425 IPR003609 -
Gso6g2151 826 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Gso6g2151 826 ProSiteProfiles Bulb-type lectin domain profile. 24 147 IPR001480 -
Gso6g2151 826 CDD B_lectin 31 153 IPR001480 -
Gso6g2151 826 Pfam Protein tyrosine and serine/threonine kinase 511 778 IPR001245 GO:0004672|GO:0006468
Gso6g2151 826 Gene3D - 19 150 IPR036426 -
Gso6g2151 826 Pfam S-locus glycoprotein domain 211 321 IPR000858 GO:0048544
Gso6g2151 826 CDD PAN_AP_plant 341 425 - -
Gso6g2151 826 ProSiteProfiles Protein kinase domain profile. 509 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2151 826 Pfam PAN-like domain 342 410 IPR003609 -
Gso6g2151 826 Gene3D Phosphorylase Kinase; domain 1 470 584 - -
Gso6g2151 826 Gene3D Transferase(Phosphotransferase) domain 1 585 787 - -
Gso6g2151 826 SMART serkin_6 509 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2151 826 PIRSF SRK 1 826 IPR024171 GO:0004674
Gso6g2151 826 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 32 819 - -
Gso6g2151 826 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 184 IPR036426 -
Gso6g2151 826 Gene3D Hepatocyte Growth Factor 341 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2151 Gso-Chr6 41169738 41173151 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2151 459 821 Receptor kinase-like Gene Family AT4G23150 50.943 4.33e-120 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso6g2151 PK_Tyr_Ser-Thr 7e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2151 6 41169738 41173151 Gso6g2151 6 41169738 41173151 ECH
Gso11g3020 11 46087617 46092673 Gso6g2151 6 41169738 41173151 PCT