Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2150 ATGACTTCTGATCTTCCTTATTCAGCTGCAACAGATATGATTAACCAGTTCCAGTCACTTGAAGATAACACAACCTTGGTTTCAAACGATGGAACCTTTGAGTTGGGTTTCTTCACCCCAGGTAGTACTTCCCCAAACCGCTATCTCGGAATCTGGTACAAAAACATACCAATCAGAACCGTTGTTTGGGTTGCCAACCGCGACAATCCAATCAAAGACAACTCCAGCAAGTTGAGCATAAACACAGCAGGCAATTTCATACTTCTCAACCAGAACAACAACACCGTGATTTGGTCAACAAACACGACAACAAAAGCATCCCTTGTCGTAGCACAGTTGTTAGACTCAGGCAACTTGGTCCTAAGAGACGAGAAAGACAACAATCCTGAAAACTACTCTTGGCAGAGCTTTGACTATCCTTCAGACACGTTTCTACCTGGAATGAAAGCAGGGTGGGACTTGAAGAAAGGCCTCAATAGGGTCCTAACCGCTTGGAAAAACTGGGATGACCCTTCTTCAGGGGACTTCACAGCGAATTCTTCACGTACCAATTTTCCTGAAGAGGTTATGTGGAAGGGCACATCAGAGTACTACAGAAGTGGACCATGGGATGGCAGAAAATTCAGTGGTAGCCCCTCTGTGCCAACCAATTCAATCGTAAACTACTCGGTTGTGTCAAACAAGGACGAATTTTACGCTACCTATAGCATGATCGATAAGTCGTTGATTTCAAGAGTTGTGGTGAATCAAACTCTTTATGTTCGTCAGCGCTTGACATGGAATGAAGATAGTCAAACGTGGAGGGTGTCGTCGGAGTTGCCCGGTGATTTATGCGACAACTATAGTACTTGTGGTGCATTTGGGATTTGTGTCGCTGGTCAGGCACCAGTGTGCAACTGTTTAGATGGATTCAAGCCAAAATCACCCCGGAATTGGACACAAATGAACTGGAATCAGGGGTGCGTGCACAACCAAACTTGGAGCTGCAAGGAAAAGAACAAGGATGGTTTTAAGAAATTCAGTAACTTGAAGGCGCCAGACACTGAAAGATCTTGGGTTAATGCAAGTATGACACTTGATGAGTGCAAAAACAAATGTAGGGAAAATTGTTCATGTACAGCCTATGCAAATTTTGACATGAGGGGAGAAGGAAGTGGCTGTGCCATTTGGTTCGGTGATCTGTTCGATATAAGACTGATTCCCAATGCTGGACAGGATCTGTATATTAGATTGGCAGTGTCTGAAACAGATGAAAAAGATGATTCAAAGAAAAAGGTGGTTGTGATTGCAAGCATCGTTTCCTCTGTAGTTGCTACGCTATTAATTTTTATATTCATTTACTGGAGCAACGCAAAAAATATCAAAGAGATCATACTTGGCATTGAAGTAAAGAACAATGAAAGCCAACAAGAAGACTTCGAGCTACCTTTGTTTGACCTTGTCTCAATAGCACAAGCCACAGATCATTTCTCAGATCACAATAAGCTTGGTGAAGGTGGTTTTGGGCCTGTATACAAGGGGACACTTCCAGATGGACTAGAGGTCGCTGTTAAGAGGCTTTCGCAAACATCTGGACAAGGATTAAAAGAATTTAAGAATGAGGTTATGTTATGTGCAAAACTCCAACACCGAAATCTTGTTAAAGTTCTAGGATGTTGCATTCAAGAAAATGAGAAATTGCTCATATACGAGTATATGGCCAACAAAAGTTTAGACGTCTTTCTTTTCGATTCTGATCGAAGTAAACTTCTTGACTGGCCAAAGCGATTCTACATTATAAATAGAATTGCTCGGGGACTACTTTATCTTCATCAAGACTCAAGACTAAGGATCATACACAGAGATCTTAAGGCAAGCAATGTATTATTAGATAATGAAATGAATCCAAAAATTTCAGATTTTGGTTTGGCTCGAATGTGTGGAGGTGATCAAATTGAAGGGAAAACAAGAAGAGTAGTCGGTACATATGGTTATATGGCTCCTGAATATGCATTTGATGGACTATTTTCCATTAAATCAGATGTATTTAGCTTCGGAGTATTATTGTTAGAGATAGTAAGTGGCAAGAAAAATAACCGACTCTTCTATCCAAATGACTACAATAATAATCTCATTGGACATGCATGGAGTTTGTGGAATGAAGGAAATCCAATGGAATTCATTGCCACTAGTTTGGAAGACTCATGCATTCTATATGAGGCCCTGCGTTGCATTCATATTGGTCTATTATGTGTACAACATCATCCTAATGATAGGCCAAACATGGCATCTGTGGTCGTATTATTGAGCAACGAGAACGCATTACCTTTACCAAAGTATCCTAGGTACTTAATCACAGACATCTCAACGGAAAGAGAATCTTCTTCTGAGAAGTTTACATCCTATTCTATTAATGATGTAACTATCTCAATGTTGAGTGATAGGTAG 2427 0.4063 MTSDLPYSAATDMINQFQSLEDNTTLVSNDGTFELGFFTPGSTSPNRYLGIWYKNIPIRTVVWVANRDNPIKDNSSKLSINTAGNFILLNQNNNTVIWSTNTTTKASLVVAQLLDSGNLVLRDEKDNNPENYSWQSFDYPSDTFLPGMKAGWDLKKGLNRVLTAWKNWDDPSSGDFTANSSRTNFPEEVMWKGTSEYYRSGPWDGRKFSGSPSVPTNSIVNYSVVSNKDEFYATYSMIDKSLISRVVVNQTLYVRQRLTWNEDSQTWRVSSELPGDLCDNYSTCGAFGICVAGQAPVCNCLDGFKPKSPRNWTQMNWNQGCVHNQTWSCKEKNKDGFKKFSNLKAPDTERSWVNASMTLDECKNKCRENCSCTAYANFDMRGEGSGCAIWFGDLFDIRLIPNAGQDLYIRLAVSETDEKDDSKKKVVVIASIVSSVVATLLIFIFIYWSNAKNIKEIILGIEVKNNESQQEDFELPLFDLVSIAQATDHFSDHNKLGEGGFGPVYKGTLPDGLEVAVKRLSQTSGQGLKEFKNEVMLCAKLQHRNLVKVLGCCIQENEKLLIYEYMANKSLDVFLFDSDRSKLLDWPKRFYIINRIARGLLYLHQDSRLRIIHRDLKASNVLLDNEMNPKISDFGLARMCGGDQIEGKTRRVVGTYGYMAPEYAFDGLFSIKSDVFSFGVLLLEIVSGKKNNRLFYPNDYNNNLIGHAWSLWNEGNPMEFIATSLEDSCILYEALRCIHIGLLCVQHHPNDRPNMASVVVLLSNENALPLPKYPRYLITDISTERESSSEKFTSYSINDVTISMLSDR* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2150 808 Gene3D Hepatocyte Growth Factor 328 407 - -
Gso6g2150 808 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 19 801 - -
Gso6g2150 808 Pfam S-locus glycoprotein domain 198 308 IPR000858 GO:0048544
Gso6g2150 808 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 19 801 - -
Gso6g2150 808 PIRSF SRK 3 808 IPR024171 GO:0004674
Gso6g2150 808 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Gso6g2150 808 SUPERFAMILY Protein kinase-like (PK-like) 473 784 IPR011009 -
Gso6g2150 808 CDD B_lectin 18 140 IPR001480 -
Gso6g2150 808 SMART serkin_6 490 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2150 808 Pfam PAN-like domain 329 397 IPR003609 -
Gso6g2150 808 Pfam D-mannose binding lectin 60 166 IPR001480 -
Gso6g2150 808 SMART blect_4 17 140 IPR001480 -
Gso6g2150 808 CDD STKc_IRAK 496 759 - -
Gso6g2150 808 SUPERFAMILY alpha-D-mannose-specific plant lectins 61 171 IPR036426 -
Gso6g2150 808 ProSiteProfiles PAN/Apple domain profile. 329 412 IPR003609 -
Gso6g2150 808 Gene3D Transferase(Phosphotransferase) domain 1 566 768 - -
Gso6g2150 808 CDD PAN_AP_plant 328 412 - -
Gso6g2150 808 Pfam Protein tyrosine and serine/threonine kinase 493 760 IPR001245 GO:0004672|GO:0006468
Gso6g2150 808 ProSiteProfiles Bulb-type lectin domain profile. 11 134 IPR001480 -
Gso6g2150 808 ProSiteProfiles Protein kinase domain profile. 490 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2150 808 SMART ntp_6 332 411 IPR003609 -
Gso6g2150 808 Gene3D - 7 137 IPR036426 -
Gso6g2150 808 Gene3D Phosphorylase Kinase; domain 1 455 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2150 Gso-Chr6 41120286 41126274 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2150 478 808 Receptor kinase-like Gene Family AT4G11480 53.824 2.03e-121 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso6g2150 PK_Tyr_Ser-Thr 3.7e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2150 6 41120286 41126274 Gso6g2150 6 41120286 41126274 ECH