Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1927 ATGAGGGAGGAAGAGATGGAGAAGCTTCGAGGAGTGGTGCGGGACTGCGTGAGCAAGCACCTCTACTCCTCCGCCATCTTCTTCGCCGACAAAGTGGCAGCCTTCACCGCCGACCCCGCAGACATCTACATGCAGGCCCAGGCCCTCTTCCTCGGCCGCCACTACCGCCGCGCCTTCCACCTCCTCAACGCATCCAAAATCGTCCTCACCGACCTCCGATTCCGCTACCTCGCCGCCAAGTGCCTCGAGGAACTGAAGGAGTGGGATCAGTGCCTGTCGATGCTGGGTGAGGCTAAAGTGGACGATGATGGAAATGTTTATGATATGAAGGACTCTAATGTCATGTACTTGGATAAAGATTGTGAAGATCGTGAAATCAATATATCCTCCGCAATATGCTTCTTAAGAGGCAAAGCATATGAAGCTTTAGAAAACCGTGCCCAGGCCAGAATGTGGTATAAAGCTGCTATAAAAGCGGATCCTTTATGCTATGAGGCTTTGGAATGCCTTATTGAGAATCACATGCTTACATGTGAGGAAGAAGCAAATTTGATCTCATCATTGCAATTTGGTAGTGAGGATGGATGGCTCTCTTCATTTTATTCTTGTTTGATAAAGAAGTATGACAAAGAAAATATTGTAGTAGCCAAGTTCAGAGATCTTGAGAATGAAAGCTGTAAAAGTGACCAATCAGATTCTTCTTTTTTGCGGACACTGAAATCCAATACTGATCTATTGGCCTGCAAAGCTGAATACTACCATCAGTGCGGTGAATATCAGAAATGTTTTGAGTTAACAAATGATTTGCTTGAGAAGGATCTTTTCCATCTAAAGACTACGCTAGTACATCTGGCAGCTGCTGTGGAGCTTGGGCATTCAAATGAACTCTATCTGATGTCATGCAATTTGGTGAAGGATTATCCTCAGATGGCTTTATCATGGTTTGCTGTTGGTTGCTACTACTATTGTATCAAGAAGTATGATCAATCCCGCCGTTATTTTAGCAAGGCAACTAGTCTAGATGGAACATTTCCCCCTGCATGGATAGGCTATGGGAATGCTTATGCTGCTCAAGAAGAGGGAGACCAGGCTATGTCTGCTTACCGCACTGCAGCTAGATTGTTTCCTGGGTGCCATTTAGCAACTCTTTACATTGGAATGGAATGCATGCGGACCCACAGTTATAAGCTTGCTGAGCAGTTTTTTACGCAGGCCAAGTCAATTTGCCCCTCAGATCCACTTGTGTATAATGAACTTGGAGTTGTTGCCTACCATATGGAAGAGTATAAGAAAGCAGTGTGGTGGTTTGAGAAAACATTAGCCTTGGTACCAACCACTTTATCTGAAATTTGGGAATCGACTGTAGTCAATCTTGCACATGCATACAGAAAGCTGAAGATGTACCGAGAAGCAATTTCATATTATGAGAAAGCACTTGCATTATCAACAAGAAGTGTGAGCACTTATGCCGGTCTTGCATATACTTACCACCTACAGGATGATTTCACCACAGCAATTGCATATTATCACAAAGTGAGTAACTGTGCTTGTATCCATGATAATGAACCTATGATGCACTCCATTCAACTATTGAGACCCATGAACATTGTTCAAGAGGCCTTGTGGCTGAAACCAGATGATCAGTTCTGCACTGAAATGTTAAGTTGGGCTCTAATAGATGAAAGTCGAAGAGGCGTTGACCCCAGTCTTGAATTCCGTTGA 1722 0.4413 MREEEMEKLRGVVRDCVSKHLYSSAIFFADKVAAFTADPADIYMQAQALFLGRHYRRAFHLLNASKIVLTDLRFRYLAAKCLEELKEWDQCLSMLGEAKVDDDGNVYDMKDSNVMYLDKDCEDREINISSAICFLRGKAYEALENRAQARMWYKAAIKADPLCYEALECLIENHMLTCEEEANLISSLQFGSEDGWLSSFYSCLIKKYDKENIVVAKFRDLENESCKSDQSDSSFLRTLKSNTDLLACKAEYYHQCGEYQKCFELTNDLLEKDLFHLKTTLVHLAAAVELGHSNELYLMSCNLVKDYPQMALSWFAVGCYYYCIKKYDQSRRYFSKATSLDGTFPPAWIGYGNAYAAQEEGDQAMSAYRTAARLFPGCHLATLYIGMECMRTHSYKLAEQFFTQAKSICPSDPLVYNELGVVAYHMEEYKKAVWWFEKTLALVPTTLSEIWESTVVNLAHAYRKLKMYREAISYYEKALALSTRSVSTYAGLAYTYHLQDDFTTAIAYYHKVSNCACIHDNEPMMHSIQLLRPMNIVQEALWLKPDDQFCTEMLSWALIDESRRGVDPSLEFR* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1927 573 ProSiteProfiles TPR repeat profile. 452 485 IPR019734 GO:0005515
Gso6g1927 573 PANTHER CELL DIVISION CYCLE 16,23,27 7 562 - -
Gso6g1927 573 Pfam Tetratricopeptide repeat 319 377 - -
Gso6g1927 573 ProSiteProfiles TPR repeat profile. 413 446 IPR019734 GO:0005515
Gso6g1927 573 SUPERFAMILY HCP-like 313 514 - -
Gso6g1927 573 Pfam Anaphase-promoting complex, cyclosome, subunit 3 19 97 - -
Gso6g1927 573 SUPERFAMILY TPR-like 42 173 IPR011990 GO:0005515
Gso6g1927 573 ProSiteProfiles TPR repeat profile. 345 378 IPR019734 GO:0005515
Gso6g1927 573 PANTHER CELL DIVISION CYCLE PROTEIN 16 HOMOLOG 7 562 - -
Gso6g1927 573 Pfam Tetratricopeptide repeat 132 161 IPR019734 GO:0005515
Gso6g1927 573 Gene3D Tetratricopeptide repeat domain 5 519 IPR011990 GO:0005515
Gso6g1927 573 SMART tpr_5 486 519 IPR019734 GO:0005515
Gso6g1927 573 SMART tpr_5 379 412 IPR019734 GO:0005515
Gso6g1927 573 SMART tpr_5 311 344 IPR019734 GO:0005515
Gso6g1927 573 SMART tpr_5 130 163 IPR019734 GO:0005515
Gso6g1927 573 SMART tpr_5 413 446 IPR019734 GO:0005515
Gso6g1927 573 SMART tpr_5 345 378 IPR019734 GO:0005515
Gso6g1927 573 SMART tpr_5 243 276 IPR019734 GO:0005515
Gso6g1927 573 SMART tpr_5 452 485 IPR019734 GO:0005515
Gso6g1927 573 SUPERFAMILY TPR-like 243 348 IPR011990 GO:0005515
Gso6g1927 573 Pfam Tetratricopeptide repeat 415 482 - -
Gso6g1927 573 ProSiteProfiles TPR repeat profile. 311 344 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1927 Gso-Chr6 31275833 31286815 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1927 328 512 Glycosyltransferase AT3G04240 26.486 3.99e-11 63.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1927 6 31275833 31286815 Gso6g1927 6 31275833 31286815 ECH