LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso2g0709	ATGGTGTCAAAATCCTATTCAAACCTATTGGAGTTGGCCTCTGGAGAGGCTCCGTCATTTGGGTACATGAACAGGAGAATTCCAAGGATTATGACTGTGGCTGGGTTGATATCTGATGTTGATGATGACCCAGTGGAGAGTGTGTGCTCTGATCCGTCGTCGTCAACCGCGCACCGAGACCGGATAATCATGGTGGCTAATCAGCTTCCCATAAGGGCTCAGAGGAGACCAAATGGGAATAATAGGAGTTGTTGGTCTTTTGAGTGGGATGAGAATGCACTTCTTCAGCTGAAAGATGGGTTAGGGGATGATGATATTGAGGTCATTTATGTTGGATGCCTTAAGGAGGAGGTTCATCCAAGTGAACAAGATGAAGTTTCACAGACACTTCTTGAGACCTTCAAGTGTATCCCGACTTTTCTCCCCGCTGACCAGTTTACTAAGTACTATCATGGTTTTTGCAAGCAGCAGTTGTGGCCACTGTTCCATTACATGTTGCCCTTGTCACCTGAGCTCGGTGGCAGGTTTAATAGGTCACTGTGGCAGGCTTATGTGTCAGTCAATAAAATTTTTGCAGATAGGATTATGGAAGTTATTAACCCTGAAGATGATTATGTGTGGATACACGATTATCATCTGATGGTGTTGCCGACTTTCTTGAGGAAGAGATTCAACAGGGTGAAACTGGGCTTCTTCCTTCACAGTCCATTCCCTTCATCAGAAATATATAAAACATTGCCTGTTAGGGAAGAGATCCTGAGAGCCCTCCTTAATTCGGATTTGATCGGCTTCCACACTTTCGATTATGCGCGGCATTTCCTCTCCTGTTGTAGCCGGATGCTTGGCCTTACCTACGAATCCAAGCGGGGATATATTGGGATTGAGTACTATGGTAGGACTGTTAGTATCAAAATTCTTCCTGTCGGTATTCACTTGGGTCAGCTTCAATCGGTTTTGAGGATGCCTCAGACTGAAGAAAAAGTTTGCGAGCTCATTAGACAGTTTTCTGATAAAGGCAGGACATTGTTGCTTGGTGTGGATGACATGGATATTTTCAAGGGAATAAGTTTGAAGTTGTTGGCCATGGAGCAGCTTCTCATTCAGCATCCTGAGTATCGGGAAAAGGTGGTGCTGGTCCAGATAGCTAATCCTGCGAGGGGGCGAGGGAAAGATGTGAAAGAAGTGCAAGCCGAGACGAAGGCCACGGTGAAACGAATTAATGAAACATTTGGGAAACCCGGGTATGATCCCGTCATTCTGATCGAGGAGCCTCTCAAGTTTTATGAGAGAGTTGCTTACTATGTTGTCGCGGAGTGTTGTTTAGTCACTGCAGTAAGGGATGGAATGAATCTCATACCGTATGAATATATCATCAGTCGTCAAGGAAATGAAACCTTGGATAAAGTTTTGGGTCTAGCTTCCTCCCCTAAGAAGAAAAGCATGTTAGTTGTGTCTGAATTCATTGGCTGTTCCCCATCTTTAAGTGGAGCAATCAGAGTGAACCCCTGGAATATTGATGCAGTAGCTGATGCAATGGACTCGGCGCTGGAAATGGCTGATTTGGAGAAGGAGCTTAGGCATGAAAAGCATTATAGATATGTTAGTACTCATGATGTCGGGTACTGGGCTCGAAGCTTCTTGCAAGATTTGGAAAGGACCTGTAGTGATCATGTGCGACGAAGGTGGTGGGGGATTGGTTTTGGATTAAGCTTTAGAGTTGTTGCGCTTGATCCAAACTTCAAGAAGCTCTCAATGGAGCACATAATTTCAGCTTACAAGCGGACGGCAACTAGGGCAATCCTTCTTGACTACGATGGTACACTAATGCCTCAATCATCCACCATTGATAAGAGTCCAAGCAGTAAATCCATTGAAATTCTTAGTAGTTTGTGTAGAGATAAGAACAACATGGTTTTCCTTGTTAGTGCTAGAAGCCGAAAGATGCTTTCTGAATGGTTTTGTCCTTGTGAGAATCTGGGAGTTGCAGCTGAGCATGGTTACTTTCTAAGAATGAAGCGAGATGAAGAGTGGGAAACACATGTTGCGGCAACAGACACTAGTTGGAAACAAATTGCAGAACCTGTAATGAAACTTTATACTGAAACAACCGATGGATCCACCATTGAAGACAAAGAGACTGCACTTGTTTGGTGCTATGAGGATGCAGATCCAGACTTTGGATCATGCCAAGCTAAGGAACTTCTCGATCATCTTGAAAGTGTGCTTGCAAATGAACCAGTAACGGTCAAGAGTGGCCAGAGCAATGTAGAGGTTAAACCACAGGGTGTTAGCAAGGGACTAGTGGCCACACGCCTACTTTCTGCCATGGAAGAAAAGGGGATGTGCCCTGATTTTGTTTTGTGTATAGGCGATGACAGGTCTGATGAAGACATGTTTGAGGTAATCACCAGTTCGATGGGGAGTCCGATCGCGGCAAAGGCCGAGGTATTCGCGTGCACGGTTTGTCGAAAACCCAGTAAGGCTAAGTACTACCTGGATGATACAACTGAAATAGTGAGATTGCTTCAGGGCTTAGCCTGTGTTTCAGAACAAATAGACAAATAG	2565	0.4472	MVSKSYSNLLELASGEAPSFGYMNRRIPRIMTVAGLISDVDDDPVESVCSDPSSSTAHRDRIIMVANQLPIRAQRRPNGNNRSCWSFEWDENALLQLKDGLGDDDIEVIYVGCLKEEVHPSEQDEVSQTLLETFKCIPTFLPADQFTKYYHGFCKQQLWPLFHYMLPLSPELGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDYVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPVREEILRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGIEYYGRTVSIKILPVGIHLGQLQSVLRMPQTEEKVCELIRQFSDKGRTLLLGVDDMDIFKGISLKLLAMEQLLIQHPEYREKVVLVQIANPARGRGKDVKEVQAETKATVKRINETFGKPGYDPVILIEEPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNETLDKVLGLASSPKKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADAMDSALEMADLEKELRHEKHYRYVSTHDVGYWARSFLQDLERTCSDHVRRRWWGIGFGLSFRVVALDPNFKKLSMEHIISAYKRTATRAILLDYDGTLMPQSSTIDKSPSSKSIEILSSLCRDKNNMVFLVSARSRKMLSEWFCPCENLGVAAEHGYFLRMKRDEEWETHVAATDTSWKQIAEPVMKLYTETTDGSTIEDKETALVWCYEDADPDFGSCQAKELLDHLESVLANEPVTVKSGQSNVEVKPQGVSKGLVATRLLSAMEEKGMCPDFVLCIGDDRSDEDMFEVITSSMGSPIAAKAEVFACTVCRKPSKAKYYLDDTTEIVRLLQGLACVSEQIDK*	855

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso2g0709	854	Gene3D	Glycogen Phosphorylase B;	53	316	-	-
	Gso2g0709	854	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	1	852	IPR001830	GO:0003824\|GO:0005992
	Gso2g0709	854	CDD	HAD_TPP	599	840	-	-
	Gso2g0709	854	Gene3D	-	731	854	IPR023214	-
	Gso2g0709	854	Gene3D	-	597	730	IPR023214	-
	Gso2g0709	854	PANTHER	ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6	1	852	-	-
	Gso2g0709	854	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	600	802	IPR006379	-
	Gso2g0709	854	SUPERFAMILY	HAD-like	598	846	IPR036412	-
	Gso2g0709	854	CDD	GT20_TPS	61	551	IPR001830	GO:0003824\|GO:0005992
	Gso2g0709	854	TIGRFAM	T6PP: trehalose-phosphatase	597	845	IPR003337	GO:0003824\|GO:0005992
	Gso2g0709	854	Pfam	Glycosyltransferase family 20	61	551	IPR001830	GO:0003824\|GO:0005992
	Gso2g0709	854	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	60	554	-	-
	Gso2g0709	854	Gene3D	Glycogen Phosphorylase B;	317	535	-	-
	Gso2g0709	854	Pfam	Trehalose-phosphatase	601	835	IPR003337	GO:0003824\|GO:0005992

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso2g0709	Gso-Chr2	7424271	7429281	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso2g0709	1	852	Trehalose Biosynthesis Gene Families	AT1G68020	79.538	0.0	1432

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso2g0709	2	7424271	7429281	Gso2g0709	2	7424271	7429281	ECH
	Gso7g1460	7	32001463	32006093	Gso2g0709	2	7424271	7429281	GST