Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0693 ATGCTCCGAAACCTTTGGAAACGTTGTTGTCGCCCACGTCTGGGTCCCACCACGTTCCTCTGCTCCGCTTCACCGTTTCACAGTGCCACCTTCACCCTCGCGAGGCGATACTTTGTCTCCAACGAGGTGGAGAAGGATCCCGGTTGGAGATGGAGGCTCGAAGAAGAACCCTCGGGTTTCGTTGACAAGGAAGAAGAAGAACAAGAATCAGCGCTTCAGATTTCGCATCCCTGGCCCGAGTGGCTCCAACTCATGAAGTGCTTGCACGACAAAGGACACTTCAGTCACGAAGAGAGAAACATCAACGCTGCTATGGGCGCCAAGGATTGCAATGTCGTTAGAACCGCATGCCTCAATTTCGGTAGAGACCACTTTCATATTTTAAGATTCTTGTCTCGAAAAGATATAGGAGTTACTGTGGCACTTGGATGTCCGAGCTTAGATAGGAAAGTGATCAACTCAGGAAAACGTCTGAGAGCATATATTGGTATTGATGAGGGAAATGTATGCAGTTCCTGCAATTTGAGGGGGGACTGTGAAAGAGCATTCGTGAAGGCACGTGAAGATGAAGGTGGAAGAACAGTGGACATTATGCGTATTGTTTTAACTTACGGACTTGATCCAATTAATGGTTCAGTGGAGAACAAACCATGTCTAACAAAAAGGGTAGAAGAATCTGTGAGAAGACTGCTGAAAGAAATAGTAGAGCACAGTAACAAAGAGGAAAATTCTAATTTTCCAGACAGCACAGAGGTTGTCACTGGACATGTTCATCCCAATGAGCAAGACAAGGGAAAAATAGATGTTTCAAAGATGAAGCAAGGCGACTGGCTTTGCCCGAAATGCAACTTCATGAACTTTGCTAGAAACATCAGGTGCTTGCGCTGTGACAGCTTCTTTGAGGAAAGAATCAAGCAATTGAAGGAGGATAATAATCACATGCCTTTGAAGAAGGGAGACTGGATATGCAATAAATGCAATTTCCTAAATTTTGCAAAGAATACAAGATGTTTGCAATGCAAAGAGAGGCCTTCCAATCGTCAAATTAATCCCGGGGAGTGGGAATGTGACTCGTGCAACTACGTCAATTTCAGAAGAAACATGGTTTGCCTGAAATGTGACCATAGACGCCCTATAGTGTCAAAGGCTTCAAGCTTTTCCTTTGAACCTCAACCAGAAGATCTAGACCACTATAAGAATAGCAAATTTTCCTTTGTGGCACGTCAGGGTGATAGAATCGATGAAACACCAATGGTGTTTGAAAGAAAAAACAGGAACAGAGATTCACCTAAGTGGAGATTTGTAGAGGATAGAAATGAAAATAACAAGTGCTTAAATAAATCAAATGATTCTTCTGAATTTATAGATTTTCCTATTGTTGGAGGTAAGACTCACTTGACTAAGGTACAAAGGAGAGAAGCATACAAGACTGAGTTGCCAAATCAGTGCAGAAGGCCTTCATGGCAAAGTGAAACTGAAAATGAGTTTTGTTCTTCAGATAACCTGAGTACTGATGATGAATTTTGTTCTGTCAATAATCAGAGTACTGATGATGAAGAAATGGACGAATGGTTTGGAAAAAGGTAG 1587 0.4253 MLRNLWKRCCRPRLGPTTFLCSASPFHSATFTLARRYFVSNEVEKDPGWRWRLEEEPSGFVDKEEEEQESALQISHPWPEWLQLMKCLHDKGHFSHEERNINAAMGAKDCNVVRTACLNFGRDHFHILRFLSRKDIGVTVALGCPSLDRKVINSGKRLRAYIGIDEGNVCSSCNLRGDCERAFVKAREDEGGRTVDIMRIVLTYGLDPINGSVENKPCLTKRVEESVRRLLKEIVEHSNKEENSNFPDSTEVVTGHVHPNEQDKGKIDVSKMKQGDWLCPKCNFMNFARNIRCLRCDSFFEERIKQLKEDNNHMPLKKGDWICNKCNFLNFAKNTRCLQCKERPSNRQINPGEWECDSCNYVNFRRNMVCLKCDHRRPIVSKASSFSFEPQPEDLDHYKNSKFSFVARQGDRIDETPMVFERKNRNRDSPKWRFVEDRNENNKCLNKSNDSSEFIDFPIVGGKTHLTKVQRREAYKTELPNQCRRPSWQSETENEFCSSDNLSTDDEFCSVNNQSTDDEEMDEWFGKR* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0693 528 PANTHER ZINC FINGER PROTEIN 34 254 - -
Gso2g0693 528 PANTHER ZINC FINGER PROTEIN 293 527 - -
Gso2g0693 528 PANTHER ZINC FINGER PROTEIN 271 296 - -
Gso2g0693 528 ProSitePatterns Zinc finger RanBP2-type signature. 277 296 IPR001876 -
Gso2g0693 528 ProSitePatterns Zinc finger RanBP2-type signature. 321 340 IPR001876 -
Gso2g0693 528 MobiDBLite consensus disorder prediction 239 263 - -
Gso2g0693 528 MobiDBLite consensus disorder prediction 508 528 - -
Gso2g0693 528 SMART zf_4 352 376 IPR001876 -
Gso2g0693 528 SMART zf_4 319 343 IPR001876 -
Gso2g0693 528 SMART zf_4 275 299 IPR001876 -
Gso2g0693 528 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 271 296 - -
Gso2g0693 528 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 34 254 - -
Gso2g0693 528 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 293 527 - -
Gso2g0693 528 Pfam Zn-finger in Ran binding protein and others 273 298 IPR001876 -
Gso2g0693 528 Pfam Zn-finger in Ran binding protein and others 352 374 IPR001876 -
Gso2g0693 528 Pfam Zn-finger in Ran binding protein and others 317 341 IPR001876 -
Gso2g0693 528 ProSiteProfiles Zinc finger RanBP2 type profile. 350 379 IPR001876 -
Gso2g0693 528 ProSitePatterns Zinc finger RanBP2-type signature. 354 373 IPR001876 -
Gso2g0693 528 SUPERFAMILY Ran binding protein zinc finger-like 344 378 IPR036443 -
Gso2g0693 528 Gene3D - 345 379 - -
Gso2g0693 528 Gene3D - 267 299 - -
Gso2g0693 528 Gene3D - 308 344 - -
Gso2g0693 528 ProSiteProfiles Zinc finger RanBP2 type profile. 273 302 IPR001876 -
Gso2g0693 528 ProSiteProfiles Zinc finger RanBP2 type profile. 317 346 IPR001876 -
Gso2g0693 528 SUPERFAMILY Ran binding protein zinc finger-like 310 342 IPR036443 -
Gso2g0693 528 SUPERFAMILY Ran binding protein zinc finger-like 272 298 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0693 Gso-Chr2 7270452 7273298 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0693 56 346 EF-hand Containing Proteins AT1G55040 39.506 7.23e-62 216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0693 2 7270452 7273298 Gso2g0693 2 7270452 7273298 ECH