Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1912 ATGGTGGGCTCTGGAGCATCAGACAGGAGCAAAGAAGCTGTTGGGATGATGGCCCTTCATGAGACCCTCAGAAGAGTCTGTCTCAACTCAGAATGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCGAGAGTCCGAGGTGGCAATGGCTGCAAGATTGGAGATGATAATGGCAGCTTGATGTTGATGTGGGAAGATGGGTTTTGCCGAGGAAGAGGTTCAGGATGTCTGGAAGATATTGATGGAGAGGATCCTGTCAGAAAGGCCTTCAGCAAAATGTCCATTCAGTTGTATAATTATGGAGAAGGGTTGATGGGGAAAGTTGCATCTGATAAGTGCCACAAGTGGGTCTTTAAAGAGCCCACAGAATGTGAACCAAATATCTCCAACTACTGGCAGAGCTCCTTTGATGCTCTTCCTCCTGAATGGACAGACCAGTTTGAGTCAGGCATTCAGACCATAGCTGTTATTCAAGCTGGACATGGCCTTCTCCAACTTGGTTCTTGCAAGATTATTCCTGAAGACCTCCATTTTGTGCTTAGAATGCGACACACTTTTGAATCCCTTGGCTACCAATCTGGTTTCTACCTCTCTCAACTCTTCTCTTCAACAAGGAATACTTCCTCATCAACTTCTGTTCCTTCAAAACCATCCACCAATATTCCAATTAGGCCACCTCTTCCACTCTTCAACTGGGGTCAGAGACCACTTACTTCAGCCACTTCCATGCTATCCTCACCCAATTTTCAACATGCAGCTAGGCTTGGGTTTCCAAAAGATGAGGCACACATGTTCCTCATGCCTCATGCATCACCTGAGGGTGCAAGAATCGAGGACATGATGGGGGAGCATGAAAACGACATAAAATGGCCCAATGGATTGTCTTTCTTCAATGCTCTCACTGGAAGAACGGATGATGCTAAGCTCTTGTTCAATCCTGAGAGCTTGGGGAACAAACCTGGTGATCAGAATCAGCATCACACAATTGGCCAAAACCGCAACTCAGAAGGCTCCAACATGCAAAATGCTAGTGGTGGAGCCAACCCAAATGAGTTCTTGAGCTTGGATAGCCACCAAGATGATGTAAGGAAAATGGACAAGTTTAAGAGGAGCTTCACTCTTCCTGCAAGAGTGGCCTCATCATCTTCATCCACTTCAATGGATCAACACCACCACCACCACCACCACCACCACCACCACCAAGGTGTGGAGTATAGGAATTCAGAAGGAGGTATGTACCCGGATGTCATGGAAACCTTTTTGGAGTGA 1272 0.4686 MVGSGASDRSKEAVGMMALHETLRRVCLNSEWTYSVFWTIRPRPRVRGGNGCKIGDDNGSLMLMWEDGFCRGRGSGCLEDIDGEDPVRKAFSKMSIQLYNYGEGLMGKVASDKCHKWVFKEPTECEPNISNYWQSSFDALPPEWTDQFESGIQTIAVIQAGHGLLQLGSCKIIPEDLHFVLRMRHTFESLGYQSGFYLSQLFSSTRNTSSSTSVPSKPSTNIPIRPPLPLFNWGQRPLTSATSMLSSPNFQHAARLGFPKDEAHMFLMPHASPEGARIEDMMGEHENDIKWPNGLSFFNALTGRTDDAKLLFNPESLGNKPGDQNQHHTIGQNRNSEGSNMQNASGGANPNEFLSLDSHQDDVRKMDKFKRSFTLPARVASSSSSTSMDQHHHHHHHHHHHQGVEYRNSEGGMYPDVMETFLE* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1912 423 MobiDBLite consensus disorder prediction 312 355 - -
Gso12g1912 423 MobiDBLite consensus disorder prediction 318 355 - -
Gso12g1912 423 MobiDBLite consensus disorder prediction 374 412 - -
Gso12g1912 423 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 87 187 IPR025610 -
Gso12g1912 423 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 19 73 IPR025610 -
Gso12g1912 423 PANTHER GB|AAF34833.1 1 423 IPR044170 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1912 Gso-Chr12 42995880 42998924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1912 20 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 31.188 9.08e-20 90.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1912 12 42995880 42998924 Gso11g2947 11 45258109 45261039 GST
Gso12g1912 12 42995880 42998924 Gso12g1364 12 35306546 35310306 PCT
Gso12g1364 12 35306546 35310306 Gso12g1912 12 42995880 42998924 PCT