Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1910 ATGGAGATCAAGAGTAGAGAGAGGATACAAGTGTCAATTGAAAAGGTGAGGAGAGACAGCACAGTTGAAGTTGAAGATGAAGAAGAGGAGGATGAAAGTGTGGTTGGTGGTGAGGGTGGTCTTGCAGAAGATGAGAAGAAGAAAGGTGGTGGAGGGAGTGGGAGAAGAGGGTCAAGTGGAGTTTCTCCACCTTCTTGTCAGGCAGAGATGTGTGGTGCTGATTTGACTGTTGCAAAGAGGTACCATCGCCGCCATAAGGTGTGTGAGCTTCATTCCAAGGCTCCTTCTGTGATGGTTGCAGGACTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCAAGAGCTGGCAGAGTTTGATGAAGCTAAAAGAAGCTGCCGGAGACGCTTGGCCAGACATAACGAGCGGCGCCGGAAAAGCAATGCTGAAACTTGCAATGAAGGATGCAGTGGAAGCAAAGGGCAGCACCCTACAGAAAGCCACTGCAGAAATGCTGATGTCTGGGGAAGAATTCAGATGAACATTGCAAAGAATTCTGGCTACAACTCCTTCCATATTAGATGA 564 0.4858 MEIKSRERIQVSIEKVRRDSTVEVEDEEEEDESVVGGEGGLAEDEKKKGGGGSGRRGSSGVSPPSCQAEMCGADLTVAKRYHRRHKVCELHSKAPSVMVAGLRQRFCQQCSRFQELAEFDEAKRSCRRRLARHNERRRKSNAETCNEGCSGSKGQHPTESHCRNADVWGRIQMNIAKNSGYNSFHIR* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1910 187 SUPERFAMILY SBT domain 64 144 IPR036893 GO:0003677|GO:0005634
Gso12g1910 187 MobiDBLite consensus disorder prediction 141 160 - -
Gso12g1910 187 Pfam SBP domain 66 139 IPR004333 GO:0003677
Gso12g1910 187 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 33 159 - -
Gso12g1910 187 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 33 159 IPR044817 GO:0003677
Gso12g1910 187 MobiDBLite consensus disorder prediction 144 158 - -
Gso12g1910 187 ProSiteProfiles Zinc finger SBP-type profile. 63 140 IPR004333 GO:0003677
Gso12g1910 187 Coils Coil 116 136 - -
Gso12g1910 187 MobiDBLite consensus disorder prediction 23 38 - -
Gso12g1910 187 MobiDBLite consensus disorder prediction 1 22 - -
Gso12g1910 187 Gene3D - 57 127 IPR036893 GO:0003677|GO:0005634
Gso12g1910 187 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1910 Gso-Chr12 42980013 42981667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1910 42 143 SBP-box Gene Family AT2G33810 62.745 6.74e-38 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso12g1910 SBP 3.6e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1910 12 42980013 42981667 Gso11g2949 11 45272125 45274366 GST
Gso12g1910 12 42980013 42981667 Gso12g1360 12 35191328 35192945 PCT
Gso12g1360 12 35191328 35192945 Gso12g1910 12 42980013 42981667 PCT