Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1364 ATGGTGGGCTCAGGAACAACAACAACAACAGATAGAAGCAAAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAAGTGTGTGTCTCAACTCAGATTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCAAGAGTGAGAGGTGGCAATGGGTGCAAGGTTGGGGATGATAACGGCAGCTTGATGTTGATGTGGGAAGATGGGTTTTGCCGAGGAAGAGTTTCAGATTGTTTGGAAGAGATTGATGGAGAGGATCCTATCAGGAAATCTTTTAGCAAAATGTCCATTCAGTTATATAATTATGGAGAAGGGTTGATGGGAAAGGTTACATCTGATAAGTGCCACAAATGGGTCTTTAAAGAGCCTACGGAATGTGAGCCTAATATCTCCAACTACTGGCAGAGCTCCTTTGATGCTCTTCCTCCTGAATGGATAGATCAGTTTGAGTCAGGCATTCAGACAATCGCTGTGATTCAAGCTGGGCATGGCCTTCTGCAACTTGGTTCTTGCAAGATTATTCCAGAAGACCTCCATTTTGTGCTAAGAATGAGACACACTTTTGAATCTCTAGGCTATCAATCAGGGTTCTACCTCTCCCAACTCTTCTCTTCAACAAGGAACACATCCTCTTCCACTTCCCTTTCTTCAAAACCATCCTCCATTCCAACTAGGCCACCCCCTCCACTCCTCAACTGGGGTCAGAGACCACTTGGATCTTCCGCTTCTATGCTACCCTCTCCCACCTTTCAGCATGCAGCCAGAATGGGGTTCCCACAGGCCAAAGATGAGACCCATATGTTCCTCATGCCTCATGCATCAGAACATGCAAGAATGGGAGACATCATGGGGGAGCATGAGAATGACATAAAATGGCCAAATGGCTTATCCATCTTCAATGCACTCACTGGAAGATCTGATGATGCTAAACTCTTGTTCAATCAAGAGAGCTTGGGGGGCAAACCAAGTGATGATCACAATCACCACCACCACCACCACCACTCTCTCAACCCAAATAATCCCACCTCATCAGTGCAAAATGCTAATAGTGTGGCAAACCCAAATGAGTTCTTGAGCTTGGATAGCCACACTGAAGGAGGAGGGGCAAGGAAACTGGACAAGTTCAAGAGGTGCTTCACTCTACCTGCTAGAATGACTTCATCTTCATCTTCTACTTCAATGGATCACCATCAACAAGCAGGTGTGGAGTATAGGAATTCAGGAGGTAGTATGTACCAGGATGTCATGGAGACCTTTTTGGAGTGA 1272 0.4631 MVGSGTTTTTDRSKEAVGMMALHEALRSVCLNSDWTYSVFWTIRPRPRVRGGNGCKVGDDNGSLMLMWEDGFCRGRVSDCLEEIDGEDPIRKSFSKMSIQLYNYGEGLMGKVTSDKCHKWVFKEPTECEPNISNYWQSSFDALPPEWIDQFESGIQTIAVIQAGHGLLQLGSCKIIPEDLHFVLRMRHTFESLGYQSGFYLSQLFSSTRNTSSSTSLSSKPSSIPTRPPPPLLNWGQRPLGSSASMLPSPTFQHAARMGFPQAKDETHMFLMPHASEHARMGDIMGEHENDIKWPNGLSIFNALTGRSDDAKLLFNQESLGGKPSDDHNHHHHHHHSLNPNNPTSSVQNANSVANPNEFLSLDSHTEGGGARKLDKFKRCFTLPARMTSSSSSTSMDHHQQAGVEYRNSGGSMYQDVMETFLE* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1364 423 PANTHER GB|AAF34833.1 1 423 IPR044170 -
Gso12g1364 423 PANTHER GB|AAF34833.1 1 423 - -
Gso12g1364 423 MobiDBLite consensus disorder prediction 317 351 - -
Gso12g1364 423 MobiDBLite consensus disorder prediction 212 240 - -
Gso12g1364 423 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 91 190 IPR025610 -
Gso12g1364 423 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 22 76 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1364 Gso-Chr12 35306546 35310306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1364 23 193 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 31.977 7.43e-19 87.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1912 12 42995880 42998924 Gso12g1364 12 35306546 35310306 PCT
Gso11g2947 11 45258109 45261039 Gso12g1364 12 35306546 35310306 PCT
Gso12g1364 12 35306546 35310306 Gso12g1912 12 42995880 42998924 PCT
Gso12g1364 12 35306546 35310306 Gso11g2947 11 45258109 45261039 PCT