Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1360 ATGGAAGGTAGGAGAGTGGAGAGGAAGAAAACATTGTTTGAGAGGGTGAGAAAGAATAGCACAGTGGATGAGGAAGTGGAAAATGAAGGGGAGGAGGAGGATGAAAGTGGTGTTAATATTACTGAAGAAGAGAAGAAGATAGGGGTTAGTAGTGGTGGTGGGAGAAGAGGGTCAAGTGGGGGTGGTGGAGGGGTTTCTCCACCTTCATGTCAAGCAGAGAGGTGTGGTGCTGATTTAACTGATGCAAAGAGGTACCATCGCCGCCACAAGGTGTGTGAGTTTCATTCCAAGGCACCTGTTGTGGTGGTTGCAGGACTGAGGCAGAGGTTTTGTCAGCAATGTAGCAGGTTCCATGATCTGGCGGAGTTTGACGAATCCAAGAGAAGCTGCCGCAGACGGTTGGCTGGACACAACGAACGGCGCAGGAAAACCAACCCGGAAGCTGCCAATGAGGGCAACAGCAAAGGCCAACACCCTAAGGAAACAACACATTGCAGGCTTGCAGATGAGAGGGGGAGAATTCAGATGAACCTAACAGGGAGTTCTGAATACAAGTCTTTCAACATCAGATGA 573 0.4956 MEGRRVERKKTLFERVRKNSTVDEEVENEGEEEDESGVNITEEEKKIGVSSGGGRRGSSGGGGGVSPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLAEFDESKRSCRRRLAGHNERRRKTNPEAANEGNSKGQHPKETTHCRLADERGRIQMNLTGSSEYKSFNIR* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1360 190 MobiDBLite consensus disorder prediction 134 172 - -
Gso12g1360 190 MobiDBLite consensus disorder prediction 1 24 - -
Gso12g1360 190 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 23 163 IPR044817 GO:0003677
Gso12g1360 190 MobiDBLite consensus disorder prediction 157 171 - -
Gso12g1360 190 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 23 163 - -
Gso12g1360 190 Gene3D - 60 131 IPR036893 GO:0003677|GO:0005634
Gso12g1360 190 ProSiteProfiles Zinc finger SBP-type profile. 67 144 IPR004333 GO:0003677
Gso12g1360 190 SUPERFAMILY SBT domain 68 148 IPR036893 GO:0003677|GO:0005634
Gso12g1360 190 Pfam SBP domain 70 143 IPR004333 GO:0003677
Gso12g1360 190 MobiDBLite consensus disorder prediction 1 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1360 Gso-Chr12 35191328 35192945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1360 1 190 SBP-box Gene Family AT3G15270 43.229 1.39e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso12g1360 SBP 1.1e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1910 12 42980013 42981667 Gso12g1360 12 35191328 35192945 PCT
Gso11g2949 11 45272125 45274366 Gso12g1360 12 35191328 35192945 PCT
Gso12g1360 12 35191328 35192945 Gso12g1910 12 42980013 42981667 PCT
Gso12g1360 12 35191328 35192945 Gso11g2949 11 45272125 45274366 PCT