Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1355 ATGGCTGACATAGCAGGTCTGGCTGAGGCTGCAGGGGCAAGGTTTAGTTCATTGGAGCTCATTGGGCAGGGATCATTTGGCGACGTGTATAAAGGGTTTGACAAGGAGCTCAACAAAGAAGTTGCTATCAAAGTGATTGATTTGGAAGAATCAGAGGATGAAATTGAGGACATTCAGAAGGAAATTTCTGTTCTGTCGCAATGTCGATCTCCATACATTACTGAGTATTATGGTTCCTTTCTTAATCAAACTAAACTTTGGATAATAATGGAATACATGGCTGGAGGCTCTGTTGCTGATCTACTCCAATCAGGTCCTCCACTTGATGAAATGTCAATAGCTTGCATTCTACGTGATTTGCTTCATGCAATTGATTACCTTCATAATGAAGGAAAAATTCATAGAGACATTAAAGCTGCAAACATTTTATTGACTGATAACGGTGATGTAAAGGTTGCAGATTTTGGTGTTTCTGCACAGTTAACAAGAACTATATCAAGGAGAAAGACCTTTGTAGGAACACCGTTTTGGATGGCACCCGAGGTTATTCAAAATTCAGAAGGATATAATGAGAAGGCAGATATCTGGTCTCTGGGCATTACTGCGATTGAGATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCAATGAGAGTGCTTTTCATCATACCCCGAGAGAATCCACCACAACTAGATGAACACTTTTCTCGCTATATGAAAGAATTTGTTTCATTGTGCTTGAAGAAGGTTCCTGCTGAGAGGCCAAGTGCTAAGGAGCTTTTGAGACATCGTTTCATTCGGAATGCTAGGAAGAGTCCAAAGCTATTGGAGAGAATAAGGGAGCGTCCAAAGTACCAAATAAAGGAAGATCAGACAACACCTAGAAATGCCCCAAGGGGGATGGGGGAGGCATCTGATACTATTAAGGTTGCAAAAGATTTAAGGGGTGACGAAACTAATCAGCCTAGTGGCCAAGGTAAAACCCTGAGAAGTTCTGGATGGGACTTCAGCATTGGTGGATCACAGGGTACTGGAACCTTTCGTAGTGTGTCACGGCCACCTCAGTTTAGAGATAAGAAAACTGAAGTTTCGGATCATCAGCTTAACCAAAGAAAAATTCCAGAGAGTGGCTATCAAGGGGAATCTGGAAATAAAAGTGCACTTAATGAGTTGCTAGAAACTTCTTTTGGAAAAGATCTTGGAGTTCCCTACCATGATGAACATCCGGATAATCACCTAGAAAATGATGAATTTTCTGGGAATGGATCAGGAACTGTTGTTATTCGATCTCCAAAAGGACCACAGCCATCAATGTTTCGTGACCAAAGTTCCCAGTCTAGCAGCAGCTATGCTTCTTTTGAAGATGTTTCTACTAGCGGAACTGTTGTTGTTTTGCATAGCCAGCATGACGATTCTGATTCTCCACAGACACCAAGGTCCCGACTGGGACTTAATAGCAGAAATTCAAATGCCTCACTGGAAGATAGTGCTACAAATCTTGTTGAGGCAAAGGCTGCTATCCAAGGCGGATTAAGGAAAGTGAATGTCCGGGAGAGATTTGCACTGGGAAAACTCAACAATGATGTACAGGATAGCAAGAGAGATCAAATGTCAAGCAGCTCTGATTCTTCAAGACCATCTCGTGAATATTTTGATGCACCAAAGGCATTTTCAAGATCACATTATTCTATTGATGATGAAGAAAGTGCCAAAATAATCTCATCCTCTGTGCCGCTATCCGTTTTGCTTATTCCTTCATTAAAAGAGGCCATTGCTGATGATCCAGATGGGTCAATAGTGCAAATTGTTATCAATGCTCTTGTAAACATGGAGAGTACAAAGCCCCAATCCTGTGATGTTTTTGTCAAAAAGTTGCTTCAGCAGTTGGCAAGTTCAAAGGAATCTTCATTTAAGGACCTGCAAGAACTTGCTGGCCAAATATTCAGCAAGACAAAGTCATCTGAAGAAACCCGAAATGCAGAGTCTGATAACAAGAAACAAAACAAGGAAGTCCATTCAAATAGCAATTTAAGCCCTCTTGCAAGATTTCTTCTATCAAGATGGCAAGGCCAAACCTCGCGGGATCTAAATCCAGCTTGA 2103 0.4165 MADIAGLAEAAGARFSSLELIGQGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSFLNQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHNEGKIHRDIKAANILLTDNGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRYMKEFVSLCLKKVPAERPSAKELLRHRFIRNARKSPKLLERIRERPKYQIKEDQTTPRNAPRGMGEASDTIKVAKDLRGDETNQPSGQGKTLRSSGWDFSIGGSQGTGTFRSVSRPPQFRDKKTEVSDHQLNQRKIPESGYQGESGNKSALNELLETSFGKDLGVPYHDEHPDNHLENDEFSGNGSGTVVIRSPKGPQPSMFRDQSSQSSSSYASFEDVSTSGTVVVLHSQHDDSDSPQTPRSRLGLNSRNSNASLEDSATNLVEAKAAIQGGLRKVNVRERFALGKLNNDVQDSKRDQMSSSSDSSRPSREYFDAPKAFSRSHYSIDDEESAKIISSSVPLSVLLIPSLKEAIADDPDGSIVQIVINALVNMESTKPQSCDVFVKKLLQQLASSKESSFKDLQELAGQIFSKTKSSEETRNAESDNKKQNKEVHSNSNLSPLARFLLSRWQGQTSRDLNPA* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1355 700 MobiDBLite consensus disorder prediction 528 552 - -
Gso12g1355 700 MobiDBLite consensus disorder prediction 533 548 - -
Gso12g1355 700 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Gso12g1355 700 SUPERFAMILY Protein kinase-like (PK-like) 14 303 IPR011009 -
Gso12g1355 700 CDD STKc_MST3_like 14 287 - -
Gso12g1355 700 MobiDBLite consensus disorder prediction 354 370 - -
Gso12g1355 700 MobiDBLite consensus disorder prediction 319 352 - -
Gso12g1355 700 MobiDBLite consensus disorder prediction 467 492 - -
Gso12g1355 700 MobiDBLite consensus disorder prediction 652 676 - -
Gso12g1355 700 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1355 700 MobiDBLite consensus disorder prediction 417 454 - -
Gso12g1355 700 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1355 700 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 698 - -
Gso12g1355 700 MobiDBLite consensus disorder prediction 400 454 - -
Gso12g1355 700 MobiDBLite consensus disorder prediction 371 385 - -
Gso12g1355 700 MobiDBLite consensus disorder prediction 655 671 - -
Gso12g1355 700 MobiDBLite consensus disorder prediction 278 385 - -
Gso12g1355 700 Gene3D Transferase(Phosphotransferase) domain 1 12 301 - -
Gso12g1355 700 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1355 700 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 698 - -
Gso12g1355 700 MobiDBLite consensus disorder prediction 401 416 - -
Gso12g1355 700 Coils Coil 41 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1355 Gso-Chr12 35025861 35043443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1355 1 697 MAP Kinase Kinase Kinase Kinase AT3G15220 65.093 0.0 869
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Gso12g1355 Pkinase 2.3e-68 CL0016