Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1322 ATGGATCCGACCAAGAAGCGCAAGCTCGACGAGAACGGCTTCATCAACAACGACTCCTCCGAGCCCCTCAAGCTCTCCCCCTCCGACGCCCGCAAGCTCATCGAGCGCTTCACCACTGACCAGCTCCTCGACATCCTCCAGGACACGGTGGCGCGCCACCCCGACGTCCTCGCAGCCGTGCGCGCTGTCTCAGACCCCGACGTCTCCCAGCGTAAGCTCTTCATCCGCGGCCTCGGCTGGGACACCACCACCGACGGCCTCCGCTCCCTCTTCTCCACCTACGGCGACCTCGAGGAGGCCGTCGTCATACTCGACAAGGCCACCGGCAAGTCTAAGGGCTACGGCTTCGTCACCTTCCGCCACGTTGACGGCGCGCTCCTCGCCCTCCGCGAGCCCAGCAAGCGCATCGACGGCCGCGTCACCGTCACGCAGCTCGCCGCCGCCGGAAACTCTGCGTTGAACGCCAACGCCGTCGACGTGGCTCTCCGTAAGATCTACGTCGCCAACGTGCCGCCAGACCTCCCCGCGGACAAGCTTCTTGCACACTTCTCCGTCTACGGTGAAATCGAAGAAGGACCGTTAGGGTTTGATAAACAGACTGGAAAATCGAAAGGGTTTGCTTTGTTTGTTTACAAGTCTCCAGAGGGGGCAAAGGCTGCGTTGATAGATCCAATGAAGACTGTGGAAGGGAGGCAGTTGAGTTGTAAGTTGGCGATTACTGATGGGAAGCAAGGGAAGCGGTCCGGGCCGGACTCGGGCCAGGCCCATCATGGGAATGTTCAGCACGGGCATGGGGATGGTGTGGGAGCAGGAATGGGGATACCTCCGAATTCGGGGTCGGGGTCGGGGCCCGGGCAGTATGGTGGGCCCGGGCATTACGGGCCTACGGTTGGGATGGGCTCTTATGGTGGTTTTGGTGGGCAGCCACCGATGGGCAATAATAACCATCCTCTGAATTCGTCGAATCCGGTACCAGGTTCTATGGCAGGTGCTGGTGGCTATGGTGGTGGGATGGGTGGGCCATATGGTGGATACGGTGGTGGGCCGGGATCAACGGGCTTTGCTGGTGCTGGTGGGATGGGAGCAGGAGGTGGAGGTGTTGGGGGCGGCGGGCTTGGTGGTGCTGGCGGTGGTTCTATGTATAGATTGCCAGGCTCGGGTGGAATGCCTGCTGGTGGTGGAGGTTATCCGGATAGTGGACACTATGGTTTATCAGCTTCATCTGGGTACCAGAATCAGCACCACCCTCCTTCTGGGGCTTCACCTGTGCCTAGGGTTCCGCCCATGTATCCCAACGTGCCCCCTTACTACTGA 1314 0.6088 MDPTKKRKLDENGFINNDSSEPLKLSPSDARKLIERFTTDQLLDILQDTVARHPDVLAAVRAVSDPDVSQRKLFIRGLGWDTTTDGLRSLFSTYGDLEEAVVILDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSALNANAVDVALRKIYVANVPPDLPADKLLAHFSVYGEIEEGPLGFDKQTGKSKGFALFVYKSPEGAKAALIDPMKTVEGRQLSCKLAITDGKQGKRSGPDSGQAHHGNVQHGHGDGVGAGMGIPPNSGSGSGPGQYGGPGHYGPTVGMGSYGGFGGQPPMGNNNHPLNSSNPVPGSMAGAGGYGGGMGGPYGGYGGGPGSTGFAGAGGMGAGGGGVGGGGLGGAGGGSMYRLPGSGGMPAGGGGYPDSGHYGLSASSGYQNQHHPPSGASPVPRVPPMYPNVPPYY* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1322 437 Gene3D - 47 153 IPR012677 -
Gso12g1322 437 MobiDBLite consensus disorder prediction 400 437 - -
Gso12g1322 437 MobiDBLite consensus disorder prediction 420 437 - -
Gso12g1322 437 PANTHER UBP1-ASSOCIATED PROTEIN 2C 1 404 - -
Gso12g1322 437 SUPERFAMILY RNA-binding domain, RBD 61 146 IPR035979 GO:0003676
Gso12g1322 437 SUPERFAMILY RNA-binding domain, RBD 152 269 IPR035979 GO:0003676
Gso12g1322 437 CDD RRM_RBM24_RBM38_like 163 238 - -
Gso12g1322 437 SMART rrm1_1 72 144 IPR000504 GO:0003723
Gso12g1322 437 SMART rrm1_1 164 236 IPR000504 GO:0003723
Gso12g1322 437 MobiDBLite consensus disorder prediction 1 23 - -
Gso12g1322 437 PANTHER GEO13361P1-RELATED 1 404 - -
Gso12g1322 437 CDD RRM_RBM24_RBM38_like 71 146 - -
Gso12g1322 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 240 IPR000504 GO:0003723
Gso12g1322 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 172 IPR000504 GO:0003723
Gso12g1322 437 Gene3D - 154 308 IPR012677 -
Gso12g1322 437 MobiDBLite consensus disorder prediction 404 418 - -
Gso12g1322 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 140 IPR000504 GO:0003723
Gso12g1322 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 165 232 IPR000504 GO:0003723
Gso12g1322 437 MobiDBLite consensus disorder prediction 241 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1322 Gso-Chr12 31349860 31357210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1322 159 356 C2H2 Transcription Factor Family AT2G19380 27.488 3.75e-11 63.2