Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1320 ATGATGAAGCCATCGATGCTCAGATCTCTCCACTCCGCCGCCACCCGCGGCGCCTCTCATCTCTTCCGCCGTGGGTACGCCTCCGAGCCGGTGCCGGAGCGCAAGGTAGCCGTTCTCGGCGCCGCCGGCGGGATCGGGCAGCCTCTCTCCCTTCTCATGAAGCTCAATCCCCTCGTTTCGAGCCTCTCCCTTTACGATATCGCCGGAACTCCCGGCGTCGCCGCCGATATCAGCCACATAAACACCAGATCTGAGGTAGTGGGGTACCAAGGTGATGAAGAGCTTGGAAAAGCTTTGGAGGGTGCCGATGTTGTTATAATTCCTGCTGGTGTGCCCAGAAAGCCTGGAATGACTCGTGATGATCTTTTTAACATCAATGCTGGCATTGTTAAGACGCTGTGTACTGCTATTGCTAAGTATTGCCCCCATGCCCTTGTTAACATGATAAGCAATCCTGTGAACTCCACTGTTCCTATTGCTGCTGAAGTTTTCAAGAAGGCAGGAACTTATGATGAGAAGAGATTGTTTGGTGTTACCACCCTTGATGTTGTTAGGGCAAAAACTTTCTATGCTGGGAAAGCCAATGTTCCAGTTGCTGGTGTTAATGTACCTGTTGTGGGCGGTCATGCAGGCATTACTATTCTGCCACTATTTTCTCAAGCCACACCAAAAGCCAATCTTGATGATGATGTCATTAAGGCTCTTACAAAGAGGACACAAGATGGAGGAACAGAAGTTGTAGAAGCTAAGGCTGGAAAGGGTTCTGCAACTTTGTCAATGGCCTATGCTGGTGCCCTTTTTGCTGATGCTTGCCTCAAGGGCCTCAATGGAGTCCCAGATGTTGTCGAGTGCTCTTTCGTGCAATCCACTGTTACTGAACTTCCCTTCTTTGCTTCCAAGGTGAGGCTTGGGACGGTTGGTGTGGAGGAAGTTCTGGGCTTGGGGCACCTCTCAGATTTTGAGCAACAAGGCCTCGAAAGCCTTAAGCCTGAACTCAAATCATCAATTGAGAAGGGAATCAAATTTGCCAACCAGTAA 1038 0.5019 MMKPSMLRSLHSAATRGASHLFRRGYASEPVPERKVAVLGAAGGIGQPLSLLMKLNPLVSSLSLYDIAGTPGVAADISHINTRSEVVGYQGDEELGKALEGADVVIIPAGVPRKPGMTRDDLFNINAGIVKTLCTAIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKRLFGVTTLDVVRAKTFYAGKANVPVAGVNVPVVGGHAGITILPLFSQATPKANLDDDVIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGTVGVEEVLGLGHLSDFEQQGLESLKPELKSSIEKGIKFANQ* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1320 345 SUPERFAMILY LDH C-terminal domain-like 178 344 IPR015955 GO:0003824|GO:0016616
Gso12g1320 345 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 35 344 IPR010097 GO:0006099|GO:0030060
Gso12g1320 345 CDD MDH_glyoxysomal_mitochondrial 35 343 IPR010097 GO:0006099|GO:0030060
Gso12g1320 345 PANTHER MALATE DEHYDROGENASE 2 344 - -
Gso12g1320 345 Pfam lactate/malate dehydrogenase, NAD binding domain 35 177 IPR001236 GO:0016491
Gso12g1320 345 Gene3D - 33 178 - -
Gso12g1320 345 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 179 342 IPR022383 GO:0016616
Gso12g1320 345 Gene3D - 179 344 IPR015955 GO:0003824|GO:0016616
Gso12g1320 345 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 177 IPR036291 -
Gso12g1320 345 PIRSF Lac_mal_DH 30 344 IPR001557 GO:0016616|GO:0019752
Gso12g1320 345 PANTHER MALATE AND LACTATE DEHYDROGENASE 2 344 - -
Gso12g1320 345 ProSitePatterns Malate dehydrogenase active site signature. 178 190 IPR001252 GO:0006108|GO:0016615
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1320 Gso-Chr12 30902138 30906101 Dispersed/Wgd