Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2949 ATGGAGATCAAGAGTGGAGAGAGGAGGCAAGTGTCAATTGAGAAGGTGAGGAGAGACAACACAGTTGAAGTAGAAGATGAAGAAGAGGAGGATGAAAGTGTGGTTGGTGGTGAGGGTGGTCTTGCAGAAGATGAAAGGAAGAAAATTGGTGGAGGAAGTGGGAGAAGAGGGTCAAGTGGAGTTTCTCCACCTTCTTGTCAGGCAGAGATATGTGGTGCTGATTTGACTGTTGCAAAGAGGTACCATCGCCGTCATAAGGTGTGTGAGCTTCATTCCAAGGCTCCTTCTGTGATGGTTGCAGGACTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGAGCTGGCAGAGTTTGATGAAGCTAAAAGAAGCTGCCGGAGACGCTTGGCCAGACACAACGAGCGGCGCCGGAAAAGCAACGCTGAAACTTGCAATGAAGGATGCAGTGGCAGCAAAGGGCAGCACCCTGCAGAAACCCACTGCAGAAATACTGATGACTGGGGAAGAATTCAGATGAACATTGCAAAGAATTCTGGCTACAAGTTCTTCCATATCAGATGA 564 0.4876 MEIKSGERRQVSIEKVRRDNTVEVEDEEEEDESVVGGEGGLAEDERKKIGGGSGRRGSSGVSPPSCQAEICGADLTVAKRYHRRHKVCELHSKAPSVMVAGLRQRFCQQCSRFHELAEFDEAKRSCRRRLARHNERRRKSNAETCNEGCSGSKGQHPAETHCRNTDDWGRIQMNIAKNSGYKFFHIR* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2949 187 MobiDBLite consensus disorder prediction 141 161 - -
Gso11g2949 187 Coils Coil 116 136 - -
Gso11g2949 187 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 33 155 IPR044817 GO:0003677
Gso11g2949 187 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 33 155 - -
Gso11g2949 187 SUPERFAMILY SBT domain 64 144 IPR036893 GO:0003677|GO:0005634
Gso11g2949 187 Gene3D - 57 127 IPR036893 GO:0003677|GO:0005634
Gso11g2949 187 MobiDBLite consensus disorder prediction 23 38 - -
Gso11g2949 187 MobiDBLite consensus disorder prediction 1 22 - -
Gso11g2949 187 MobiDBLite consensus disorder prediction 1 65 - -
Gso11g2949 187 Pfam SBP domain 66 139 IPR004333 GO:0003677
Gso11g2949 187 ProSiteProfiles Zinc finger SBP-type profile. 63 140 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2949 Gso-Chr11 45272125 45274366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2949 54 154 SBP-box Gene Family AT1G53160 65.049 4.49e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso11g2949 SBP 8.1e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1910 12 42980013 42981667 Gso11g2949 11 45272125 45274366 GST
Gso15g0655 15 5860963 5863048 Gso11g2949 11 45272125 45274366 GST
Gso7g1687 7 38938001 38940118 Gso11g2949 11 45272125 45274366 PCT
Gso11g2949 11 45272125 45274366 Gso12g1360 12 35191328 35192945 PCT
Gso12g1360 12 35191328 35192945 Gso11g2949 11 45272125 45274366 PCT