Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00399 ATGAAACAACACTTTGATCTTGAAGTGGTGGCCTCAGCAGAATATGAATCTGAAGTTAGCAGCAAGGTTGCTTCCAATATATCTATCCAAGAAACCTATGCAGGTCCTTGCAGTGACAACCTCACCAACTCTTCCAATGTGACAAATCCAATAGAGCTTCATCTCCATTCAGATGCTATCTCCCTTGACTTAACTCTCAAATTCAACAACAATGACTTCTCATTCTCAAGCACAAGTGAGAGCAGCAATGGTCCTCTCTCTCAAACTAATTTAGCAGCCAACCCGCGAGTCTTCTCTTGCAATTACTGCAAGCGCAAGTTTTTCAGCTCACAGGCTCTTGGCGGCCACCAAAATGCACACAAGAGAGAAAGAACAATAGCGAAGAGAGCTATGCGAATGGGGATATTCTCTGAGAGGTATGCAAGTCTAGCATCTCTCCCTTTTCATGGTTCTTTCAGGTCCTTAGGAATAAAGGCACACTCTTCACTGCACCACGGCTTTTCGCCAACAATGAGGCCTCCTGAGATGAAAAGCAGTGCAAGATTTGAGCAAGGATATGTTGGTCTTCCAATATTCTTGGAGGAGGATGAGGCAGAACTCTTGTGGCAAGGTAGCTACCATCAGGTTCCCTCTGAGGAAGGCCATACTCATCAGAATTTCACACTCAGTGGAAGTTCAAATTTGAGTTTTGTTGGTTCGAGTCTTCCACCAGTTGACTTAGAGAACTCAACACCTGAGTTGACATTGAAACTTTGA 756 0.4418 MKQHFDLEVVASAEYESEVSSKVASNISIQETYAGPCSDNLTNSSNVTNPIELHLHSDAISLDLTLKFNNNDFSFSSTSESSNGPLSQTNLAANPRVFSCNYCKRKFFSSQALGGHQNAHKRERTIAKRAMRMGIFSERYASLASLPFHGSFRSLGIKAHSSLHHGFSPTMRPPEMKSSARFEQGYVGLPIFLEEDEAELLWQGSYHQVPSEEGHTHQNFTLSGSSNLSFVGSSLPPVDLENSTPELTLKL 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00399 251 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Gma18g00399 251 PANTHER ZINC FINGER PROTEIN JAGGED 1 251 IPR045320 GO:0003700
Gma18g00399 251 PANTHER ZINC FINGER PROTEIN 3-RELATED 1 251 - -
Gma18g00399 251 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Gma18g00399 251 Gene3D Classic Zinc Finger 76 144 - -
Gma18g00399 251 SUPERFAMILY beta-beta-alpha zinc fingers 95 125 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00399 Gma-Chr18 3615625 3618839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00399 96 251 C2H2 Transcription Factor Family AT1G66140 49.724 2.50e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma18g00399 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00399 18 3615625 3618839 Gma18g00399 18 3615625 3618839 ECH
Gma18g00399 18 3615625 3618839 Gma11g02171 11 36797590 36798339 GST
Gma18g00399 18 3615625 3618839 Gma14g02067 14 51792704 51793477 PCT
Gma18g00399 18 3615625 3618839 Gma02g02294 02 49006459 49008655 PCT
Gma14g02067 14 51792704 51793477 Gma18g00399 18 3615625 3618839 PCT
Gma02g02294 02 49006459 49008655 Gma18g00399 18 3615625 3618839 PCT