Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00398 ATGAAGAACCACAAGTCCCACATCGCTACTTACCTATCTTGTTTCCTCTCCATAATCCTCTACGCACACTCCCAAGATGACGCTTCAGCGATGCTCTCTCTCAGAGACAGTCTCAACCCGCCCGAATCTCTCGGGTGGTCCGACCCGGACCCGTGTAAGTGGAAACACGTCGCGTGCTCCGAAGAGGTCAAACGGATCATTCGTATCCAAATCGGGCACTTGGGTCTCCAGGGAACACTTCCCAACGCCACCGTGATCCAAACCCTGACCCAATTGGAACGCTTGGAGCTCCAATTCAACAACATTTCGGGTCCCCTCCCGAGCCTAAACGGGTTGGGCTCCCTCCAAGTCCTCATTCTCAGCAACAACCAATTCTCTTCCATCCCCGACGACTTCTTCGCCGGCATGTCGGAGCTTCAGAGCGTCGAGATCGACGACAACCCCTTCAAACCTTGGAAGATCCCCGACAGCATTGTTAACTGCTCTTCCCTCCAAAATTTTTCTGCGAATTCCGCCAACATTGTCGGCACACTCCCGGATTTCTTCTCGAGTCTTCCCACGTTGACCCACTTGCACTTGGCCTTCAATAACCTCCAGGGTGCATTGCCTTTGAGCTTTTCCGGGTCTCAGATTGAGACTCTCTGGTTGAACGGGCAAAAGGGTGTTGAAAGCAACAACCTTGGCGGCAATGTTGATGTTTTGCAGAACATGACGTCGTTGACGCAGGTTTGGTTGCATTCCAACGCTTTTACTGGGCCTCTTCCTGATTTTTCCGGTTTGGTAAGCTTGCAAGATTTGAACTTGAGGGATAACGCCTTCACGGGTCCTGTTCCTGGGTCTTTGGTGGAGTTGAAATCGCTTAAAGCTGTGAACTTGACTAATAACTTGTTTCAGGGGGCAGTGCCTGAGTTTGGTTCTGGGGTTGAGGTGGACTTGGATTTGGGTGATGATTCTAACAGTTTCTGTTTGTCACGTGGAGGGAAGTGCGATCCAAGGGTGGAGATTCTGCTTTCTGTTGTGAGGGTTTTAGGGTATCCTAGGAGGTTTGCTGAGAATTGGAAGGGGAATAGTCCTTGTGCTGATTGGATTGGGGTTACTTGTAGTGGTGGTGGGGACATTACTGTTGTTAATTTTCAGAAGATGGGTCTTGAGGGTACTATAGCTCCTGAGTTTGGTTTGCTTAAATCACTGCAAAGGCTTGTGCTTGCTGATAATAATCTCACTGGGTCAATTCCAGAAGAGCTAGCTTCCTTACCTGGACTTGTTGAATTGAATGTTGCAAACAATCGGCTTTATGGGAAGATCCCGAGTTTTAAGAGCAATGTGGTTCTTACCACAAATGGGAATAAGGACATAGGGAAGGATAAGCCCAACCCGGGGCCTAGATCATCACCTTTAGGTCCACTAAATTCAAGAGCTCCAAACAGAAGTGAAGAAAATGGTGGCAAAAGATCTTCACATGTAGGGGTGATTGTGCTTGCTGTGATAGGTGGTGTGGTGTTGGTTTTGGTGATTAGTTTCTTGGTGTGTTGTCTGTTTAGGATGAAGCAGAAACGGTTGAGCAAGGTGCAGAGTCCAAATGCATTGGTTATTCACCCGCGGCATTCTGGATCGGATAATGAAAATGTGAAGATAACGGTTGCAGGTTCAAGTCTCAGTGTTTGTGATGTTAGTGGAATTGGAATGCAAACCATGGCTGGCAGTGAGGCAGGGGATATTCAAATGGGTGAAGCAGGGAACATGGTTATTTCTATTCAAGTTCTGAGGAATGTCACTGACAACTTCAGTGAGAAGAATATACTGGGACAAGGAGGTTTTGGAACTGTTTACAAAGGTGAACTGCATGATggcacgaagattgcagtgaaaaggatggaatctggggcaataagtgggaaaggtgcaacagaatttaagtctgaaattgctgttttgacgaaagttcgccaccggcatcttgtttcccttcttggttactgcttggatgggaatgagaagcttcttgtgtatgagtacatgcctCAGGGGACATTAAGTAAGCACCTTTTTAACTGGATGGAAGAAGGACTGAAGCCACTGGAATGGAACAGAAGATTGACCATTGCCTTAGATGTGGCAAGGGCTGTTGAGTATCTTCATAGCTTGGCCCATCAAAGCTTTATTCATAGAGACTTAAAGCCTTCAAACATTCTCCTTGGAGATGATATGAGAGCAAAGGTTTCAGATTTTGGTCTTGTGCGTCTTGCTCCAGAAGGAAAAGCTTCCGTAGAAACAAGGATTGCTGGAACTTTTGGATATTTGGCACCAGAATATGCAGTTACTGGTCGTGTGACTACTAAAGTTGATGTGTTCAGCTTTGGGGTAATATTGATGGAGCTGATAACTGGAAGAAGAGCACTTGATGATACCCAACCAGAGGATAGCATGCACCTTGTAACATGGTTCCGTAGAATGTATGTAAATAAAGACTCATTCCAGAAAGCCATTGACCACACAATTGATCTCAATGAGGAAACGCTTCCCCGTATTCACACTGTAGCTGAATTAGCTGGCCACTGTTGTGCAAGGGAGCCATATCAAAGGCCTGACGCAGGTCATGCTGTTAATGTGCTTTCTTCTCTTGTAGAACTTTGGAAACCATCTGATCAAAGTTCTGAAGATGTATATGGCATTGACCTAGACATGTCTTTACCACAAGCATTGAAGAAGTGGCAGGCTTATGAAGGTAGAAGCCAAATGGAATCTTCTTCTTCATCACTCCTACCTCCTAGCTTGGATAACACTCATACAAGCATACCTACGCGTCCGAATGGATTTGTGGAGTCTTTCACATCAGCAGATGGTAGGTGA 2850 0.4347 MKNHKSHIATYLSCFLSIILYAHSQDDASAMLSLRDSLNPPESLGWSDPDPCKWKHVACSEEVKRIIRIQIGHLGLQGTLPNATVIQTLTQLERLELQFNNISGPLPSLNGLGSLQVLILSNNQFSSIPDDFFAGMSELQSVEIDDNPFKPWKIPDSIVNCSSLQNFSANSANIVGTLPDFFSSLPTLTHLHLAFNNLQGALPLSFSGSQIETLWLNGQKGVESNNLGGNVDVLQNMTSLTQVWLHSNAFTGPLPDFSGLVSLQDLNLRDNAFTGPVPGSLVELKSLKAVNLTNNLFQGAVPEFGSGVEVDLDLGDDSNSFCLSRGGKCDPRVEILLSVVRVLGYPRRFAENWKGNSPCADWIGVTCSGGGDITVVNFQKMGLEGTIAPEFGLLKSLQRLVLADNNLTGSIPEELASLPGLVELNVANNRLYGKIPSFKSNVVLTTNGNKDIGKDKPNPGPRSSPLGPLNSRAPNRSEENGGKRSSHVGVIVLAVIGGVVLVLVISFLVCCLFRMKQKRLSKVQSPNALVIHPRHSGSDNENVKITVAGSSLSVCDVSGIGMQTMAGSEAGDIQMGEAGNMVISIQVLRNVTDNFSEKNILGQGGFGTVYKGELHDGTKIAVKRMESGAISGKGATEFKSEIAVLTKVRHRHLVSLLGYCLDGNEKLLVYEYMPQGTLSKHLFNWMEEGLKPLEWNRRLTIALDVARAVEYLHSLAHQSFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGKASVETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELITGRRALDDTQPEDSMHLVTWFRRMYVNKDSFQKAIDHTIDLNEETLPRIHTVAELAGHCCAREPYQRPDAGHAVNVLSSLVELWKPSDQSSEDVYGIDLDMSLPQALKKWQAYEGRSQMESSSSSLLPPSLDNTHTSIPTRPNGFVESFTSADGR 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00398 949 SUPERFAMILY L domain-like 32 445 - -
Gma18g00398 949 SMART LRR_typ_2 112 135 IPR003591 -
Gma18g00398 949 SMART LRR_typ_2 260 283 IPR003591 -
Gma18g00398 949 SMART LRR_typ_2 394 418 IPR003591 -
Gma18g00398 949 SMART LRR_typ_2 185 208 IPR003591 -
Gma18g00398 949 SMART LRR_typ_2 284 307 IPR003591 -
Gma18g00398 949 SMART LRR_typ_2 89 111 IPR003591 -
Gma18g00398 949 ProSitePatterns Serine/Threonine protein kinases active-site signature. 720 732 IPR008271 GO:0004672|GO:0006468
Gma18g00398 949 ProSitePatterns Protein kinases ATP-binding region signature. 601 623 IPR017441 GO:0005524
Gma18g00398 949 ProSiteProfiles Protein kinase domain profile. 595 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g00398 949 Pfam Leucine rich repeat 91 148 IPR001611 GO:0005515
Gma18g00398 949 Gene3D Transferase(Phosphotransferase) domain 1 673 893 - -
Gma18g00398 949 SUPERFAMILY Protein kinase-like (PK-like) 583 886 IPR011009 -
Gma18g00398 949 MobiDBLite consensus disorder prediction 912 949 - -
Gma18g00398 949 Pfam Protein kinase domain 596 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g00398 949 Gene3D Phosphorylase Kinase; domain 1 557 672 - -
Gma18g00398 949 MobiDBLite consensus disorder prediction 446 483 - -
Gma18g00398 949 ProSiteProfiles Leucine-rich repeat profile. 114 135 IPR001611 GO:0005515
Gma18g00398 949 PANTHER OSJNBA0070M12.3 PROTEIN 9 949 - -
Gma18g00398 949 Gene3D Ribonuclease Inhibitor 23 329 IPR032675 -
Gma18g00398 949 Pfam Leucine rich repeat N-terminal domain 25 60 IPR013210 -
Gma18g00398 949 Pfam Leucine rich repeat N-terminal domain 334 368 IPR013210 -
Gma18g00398 949 SMART serkin_6 595 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g00398 949 Gene3D Ribonuclease Inhibitor 331 456 IPR032675 -
Gma18g00398 949 PANTHER RECEPTOR PROTEIN KINASE TMK1 9 949 - -
Gma18g00398 949 CDD STKc_IRAK 601 874 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00398 Gma-Chr18 3588651 3592278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00398 90 877 Receptor kinase-like Gene Family AT5G07280 32.238 9.55e-85 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Gma18g00398 Pkinase 3.7e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00398 18 3588651 3592278 Gma18g00398 18 3588651 3592278 ECH