Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma14g02069 ATGGTTTTGTCATGGACAAAAGGGAGAGTGTTCCGGCGTGCCAGAAAGGGTAAGGAGTTGAAATATTCTGGTGGCGACATGGAGATAGAGATTGCGATCCCCACCCACTTCCGGTGCCCGGTAACCTTGGACATGATGAAGGACCCCGTGACCGTTTCCACGGGCATAACCTATGACCGCGACAGCATCGAGAAGTGGATCGAGTCCGGGAACCGCACGTGCCCGGTCACCAAAACCGAGCTGACCAGCCTCGACGACATGATCCCGAACCACGCCATCCGTAGGATGATCCAGGACTGGTGCGTGGAGCACCGCTCCCACGGCATCGAACGGATCCCCACTCCTCGTATCCCCGTCACCCCGTACGAGGTTGCCGACACGTGTACGAGGATCCTGTCGGCGGCGCAGCACGGCGACGAGAACAAGTGCGTGGAGTTGGTGAGGAAGATCAAGGCTTGGGGGAAGGAAAGTGAGAGAAACAAAAGGTGCATAGTGGCCAATGGTGCTGCTTTAGCACTATCCAATGCCTTCAACTCTTTCTCATCACGTGGGTTGTTGATTGAGAAGAACGTGGTTGTGTTGGATGAGATTCTGGGGGCTTTGGTATGGATGCGTCCTCTTTCTGAAGAGGGTAGATCCGTGTTGGGGTCAACGAGTTCTATCTCTTGCATGGTTTGGTTCATGAACGGTAAACAATTGTCCACAAGGCAAAACGCTGCTTTGGTTCTTAAGGAAATGCATGTTGAGGCGTTGGTGAAGTGTGTAGATGTTGTTGAGGCTTTGGTTAACATGATTAAGGAGCCTGTTGGGAATGGTTCCACCAAGCCGTGTTTGTCAACGATTTTCAACTTGGTTAGTTATTCTTCAGTTAGAGGTGTGACTTGTGAAAGGTTTGTGGAATTGGGTTTGGTTGATGCGGTGTTGGAGGTTCTTGTTGATGCGGAGAGAGGGGTGTGTGAGAAGGCTTTGGGGGTGTTGGATTGCGTTTGTGATTGCAAGCAAGGGGTGCAGATGGCAAAGGCTAATGCTTTGACTTTGCCTCTTGTGATTAAGAAGCTTTTGAGGGTGTCTGAGTTGAGTTCAAGCTTTGCGGTTTCGGTTCTTTGGAAACTTTTTTGTGACAAGAATGAAGAAGGGGTGTTGATTGAGGCGCTTCAAATGGGAGTGTTTCATAAACTACTTGTTTTGTTGCAAGTGGGTTGTGGTGAGGGAACCAAAGAGAAGGCTACGGAGTTGTTGAAGTTGTTGAATGGTCATATTGGTAGAAACAGAATATACTCTTGTACAAAGACACACACACAGAGTCTCATATACGGAGGATACAAATTGCCATACAAATGCAACAAGCGACTAGTTATTTCTCTGAATCCTCTCCCACATTCTGGTTCAACGACAAATAATGAGGCATCATGCAATACTTGCAATAGAAAATTGACTGAACCCGATTTATATCGCTATTGCTCCATTTCTTGCAAGGTCAAAGCTGTTTTAAGTAAGTTTGATGATTAA 1509 0.4785 MVLSWTKGRVFRRARKGKELKYSGGDMEIEIAIPTHFRCPVTLDMMKDPVTVSTGITYDRDSIEKWIESGNRTCPVTKTELTSLDDMIPNHAIRRMIQDWCVEHRSHGIERIPTPRIPVTPYEVADTCTRILSAAQHGDENKCVELVRKIKAWGKESERNKRCIVANGAALALSNAFNSFSSRGLLIEKNVVVLDEILGALVWMRPLSEEGRSVLGSTSSISCMVWFMNGKQLSTRQNAALVLKEMHVEALVKCVDVVEALVNMIKEPVGNGSTKPCLSTIFNLVSYSSVRGVTCERFVELGLVDAVLEVLVDAERGVCEKALGVLDCVCDCKQGVQMAKANALTLPLVIKKLLRVSELSSSFAVSVLWKLFCDKNEEGVLIEALQMGVFHKLLVLLQVGCGEGTKEKATELLKLLNGHIGRNRIYSCTKTHTQSLIYGGYKLPYKCNKRLVISLNPLPHSGSTTNNEASCNTCNRKLTEPDLYRYCSISCKVKAVLSKFDD 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma14g02069 502 SUPERFAMILY RING/U-box 28 110 - -
Gma14g02069 502 SUPERFAMILY ARM repeat 130 416 IPR016024 -
Gma14g02069 502 Gene3D - 126 425 IPR011989 -
Gma14g02069 502 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 111 IPR013083 -
Gma14g02069 502 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 422 - -
Gma14g02069 502 CDD RING-Ubox_PUB 37 78 IPR045210 -
Gma14g02069 502 PANTHER WDSAM1 PROTEIN 5 422 IPR045185 GO:0061630
Gma14g02069 502 Pfam PLATZ transcription factor 444 493 IPR006734 -
Gma14g02069 502 ProSiteProfiles U-box domain profile. 32 107 IPR003613 GO:0004842|GO:0016567
Gma14g02069 502 Pfam U-box domain 33 105 IPR003613 GO:0004842|GO:0016567
Gma14g02069 502 SMART Ubox_2 36 100 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma14g02069 Gma-Chr14 51832569 51835573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma14g02069 20 420 U-box Gene Family AT5G37490 44.963 5.95e-111 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Gma14g02069 U-box 4.9e-20 CL0229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g02069 14 51832569 51835573 Gma02g02298 02 49047249 49048634 GST
Gma18g00397 18 3584669 3585964 Gma14g02069 14 51832569 51835573 PCT
Gma11g02173 11 36834075 36835760 Gma14g02069 14 51832569 51835573 PCT
Gma14g02069 14 51832569 51835573 Gma18g00397 18 3584669 3585964 PCT
Gma14g02069 14 51832569 51835573 Gma11g02173 11 36834075 36835760 PCT