Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02616 ATGGTGGTGAGGAGTGACAGGTTGAAGAGGGATGTGGCAGATTGTGGTGACAACAACCAAAACGGGTACGTGGAGCAAGAGAAGAAGATAAAAGGGGTGCATATATGCGGTGTTGTCAACGCCGATCTTCATGAGGCCAAGCAGTACCACAGGAGGCACAGGGTGTGTGAGTATCATGTAAAGGCTCAGGTTGTGCTTGTTGATGAGGTTAGACAACGGTTCTGTCAGCAATGTAGCAGATTCCACGAATTAGCTGAATTTGATGACACAAAAAGAAGTTGCCGCAGCAGTTTGGCCGGACACAATGAACGGAGGAGAAAGAACTCAGATCAGTCTCAAGCAGAAGGGTCAAGCCGCAACAAAGGGACAGGGCACCCTCAATTGAAGGACATTACTTGTGGTCAGGCTGATGAGAGGGGGAGAATTCAGATAACAATCCACGAAAATGCTGCTTACAAACATTTCCAGATAAGATGA 477 0.4738 MVVRSDRLKRDVADCGDNNQNGYVEQEKKIKGVHICGVVNADLHEAKQYHRRHRVCEYHVKAQVVLVDEVRQRFCQQCSRFHELAEFDDTKRSCRSSLAGHNERRRKNSDQSQAEGSSRNKGTGHPQLKDITCGQADERGRIQITIHENAAYKHFQIR 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02616 158 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 20 158 - -
Gma13g02616 158 Pfam SBP domain 40 107 IPR004333 GO:0003677
Gma13g02616 158 MobiDBLite consensus disorder prediction 97 131 - -
Gma13g02616 158 Gene3D - 32 95 IPR036893 GO:0003677|GO:0005634
Gma13g02616 158 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 20 158 IPR044817 GO:0003677
Gma13g02616 158 SUPERFAMILY SBT domain 40 111 IPR036893 GO:0003677|GO:0005634
Gma13g02616 158 MobiDBLite consensus disorder prediction 97 112 - -
Gma13g02616 158 ProSiteProfiles Zinc finger SBP-type profile. 31 108 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02616 Gma-Chr13 40965576 40967155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02616 40 158 SBP-box Gene Family AT3G15270 56.667 5.73e-35 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gma13g02616 SBP 9.3e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02616 13 40965576 40967155 Gma12g02122 12 42029662 42030771 ECH
Gma13g02616 13 40965576 40967155 Gma13g02437 13 39145229 39146366 ECH
Gma13g02616 13 40965576 40967155 Gma13g02616 13 40965576 40967155 ECH
Gma13g02616 13 40965576 40967155 Gma15g00721 15 5942085 5943862 ECH