Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02437 ATGGAGATCAAGAGTGGAGAGAGGAGGCAAGTGTCAATTGAGAAGGTGAGGAGAGACAACACAGTTGAAGTAGAAGATGAAGAAGAGGAGGATGAAAGTGTGGTTGGTGGTGAGGGTGGTCTTGCAGAAGATGAAAGGAAGAAAATTGGTGGAGGAAGTGGGAGAAGAGGGTCAAGTGGAGTTTCTCCACCTTCTTGTCAGGCAGAGATATGTGGTGCTGATTTGACTGTTGCAAAGAGGTACCATCGCCGTCATAAGGTGTGTGAGCTTCATTCCAAGGCTCCTTCTGTGATGGTTGCAGGACTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGAGCTGGCAGAGTTTGATGAAGCTAAAAGAAGCTGCCGGAGACGCTTGGCCAGACACAACGAGCGGCGCCGGAAAAGCAACGCTGAAACTTGCAATGAAGGATGCAGTGGCAGCAAAGGGCAGCACCCTGCAGAAACCCACTGCAGAAATACTGATGACTGGGGAAGAATTCAGATGAACATTGCAAAGAATTCTGGCTACAAGTCCTTCCATATCAGATGA 564 0.4894 MEIKSGERRQVSIEKVRRDNTVEVEDEEEEDESVVGGEGGLAEDERKKIGGGSGRRGSSGVSPPSCQAEICGADLTVAKRYHRRHKVCELHSKAPSVMVAGLRQRFCQQCSRFHELAEFDEAKRSCRRRLARHNERRRKSNAETCNEGCSGSKGQHPAETHCRNTDDWGRIQMNIAKNSGYKSFHIR 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02437 187 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 33 155 IPR044817 GO:0003677
Gma13g02437 187 MobiDBLite consensus disorder prediction 1 63 - -
Gma13g02437 187 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 33 155 - -
Gma13g02437 187 Coils Coil 116 136 - -
Gma13g02437 187 SUPERFAMILY SBT domain 64 144 IPR036893 GO:0003677|GO:0005634
Gma13g02437 187 Gene3D - 57 127 IPR036893 GO:0003677|GO:0005634
Gma13g02437 187 MobiDBLite consensus disorder prediction 23 38 - -
Gma13g02437 187 MobiDBLite consensus disorder prediction 1 22 - -
Gma13g02437 187 Pfam SBP domain 66 139 IPR004333 GO:0003677
Gma13g02437 187 ProSiteProfiles Zinc finger SBP-type profile. 63 140 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02437 Gma-Chr13 39145229 39146366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02437 54 154 SBP-box Gene Family AT1G53160 65.049 3.62e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gma13g02437 SBP 8e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02122 12 42029662 42030771 Gma13g02437 13 39145229 39146366 ECH
Gma13g02616 13 40965576 40967155 Gma13g02437 13 39145229 39146366 ECH
Gma13g02437 13 39145229 39146366 Gma15g00721 15 5942085 5943862 ECH
Gma13g02437 13 39145229 39146366 Gma13g02437 13 39145229 39146366 ECH
Gma13g02437 13 39145229 39146366 Gma12g01532 12 34177765 34179336 PCT
Gma12g01532 12 34177765 34179336 Gma13g02437 13 39145229 39146366 PCT