Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02402 ATGTCGCATTCGTCGGGGAAGCCGGTTTCCGAGGTGGTCGGCATAGACGCCACCTTCTCCGATCGGTTCCGCGACGCCCTCACCTGCGACGACAATAACAACATTAACAAGCCCGACTTCCGAGAACTCGATCTGGGCTCGCCGGTCTCGCCATTGCGGACCACGCGCGGGCCTGCTGCCAGTAGCAGCTCCAGCTCCTCCGGTTCCTTTTCGGGCCGAACCGGACCCACCCGAAAGCCCGAATCGGCACAAAATAATAGCAACACCAACACTCACATTCACAGCAATAACAACAACTCCGGTGAACTTTCTGGTTCGAGTGAGAACAGTCCCACTGCGCGCAAGCCGGGTCACACGAGATCTGACTCCGGATCTGCGCCCGTTCCCTTGATATATTCCGGTCAGACAGCGACCTCGCCTGTGATGAATGTTCTTCCCACAGGAAACATTTGTCCATCCGGGAAGATCTTGAAGACGGGGATGACTCCGAATCGGAGTAGCAGAACTAGTAGAAGCGATGTGTTGGGGTCGGGGATGGGGAACTATGGCCACGGGAGCATAATGCGCGGCGGAGGGAAGGCTGAGCCGGCGAGTACTCGCGGCAGTGGCGGCGGGAATGAGATGGTGAAGAGAGGGGGACACGTGCAGAGTGTGGATCCGGAAGAGTTGAAGAGGTTGGGGAATGAGTGTTACAAAAGGGGAAACTTTGTTGATGCGTTGAGTCTCTATGATCGCGCGATTGCGATGTCGCCGGCGAGTGCCGCTTACCGGAGCAACCGTGCGGCGGCGTTGACGGGGCTCGGAAGGTTGGGTGAGGCTGTGAGGGAATGTGAGGAGGCTGTGAGGTTGGATCCTAATTATGGGAGGGCTCATCAGCGTTTGGCTTCTCTTTTCCTTAGGTTGGGACAAGTTGAGAATGCAAGGAAGCACCTTTGTTATCCTGGGATGCAGCCAGATCCGTCTGATATGCAGAGGTTGCAAGTGGTGGAAAAGCATATCAGCAAATGTGGGGATGTACGGAGGGTTGGGGATTGGAAGAGTGTTCTCAGGGAAGTTGATGCTGCTGTTGCTGCTGGAGCGGATTCTTCTTATCAGCTCTTTATGTGTAGAGCAGAAGCGTTTTTGAAGCTCCACCAGATTGATGATGCGGAATCAATTTTGTTGCATATTCCCAAATCAGAGCCGCACACTAATTCCTCTTCTCAGGCAAGGTTTTTTGGGATGCTATGTGAGGCTTATTCCTATTTTGTCAGAGCTCAGATTGAGATGGCATTGGGAAGGTTTGAGAATGCGGTTACAGCTGCTGAGAAAGCCAGTCAGAATGATTCCCGGAATGTTGAAGTTGCTGTTTTGCTCAACAATGTCAGGATGGTGGCAAGGGCTCGAGTGCGGGGAAATGATCTTTTTAAATCTGAAAGGTACACTGAAGCTTGCTTGGCGTATGGGGAAGGTTTGAGACTTGACCCTTCAAATTCCGTTCTATATTGCAATAGAGCAGCTTGTTGGTTTAAGCTTGGGCAATGGGAAAGGTCAATTGAAGACTCCAACCAAGCTTTACATATCCAACCAAATTACACCAAGGCTCTTCTTCGAAGAGCTGCATCAAACAGCAAGCTAGAAAGGTGGGAGGAAGCAGTCAAAGATTATGAGATCTTGCGGAAAGAACTTCCAAATGACAATGAAGTTGCTGAATCTCTTTTCCATGCACAAGTTGCCCTAAAGAAATCACGTGGAGAAGAAGTAACAAATTTAAAATTTGGTGGTGAAGTGGAAGAAGTCTCAGGTCTTGAGCAGTTTAGAGCTGCAATTTCTTTACCAGGTGTATCTGTTGTCCATTTTGAAGTTGCATCTAACTCGCAATGCAAACAAATATCGCCATTTGTCAATACACTATGTGGTCGATATCCATCTATTAACTTCCTCAAGGTGGACATTCAACAAAGCCCAACAGTTGCCACTGCAGAGAACGTTAGGATTGTACCGACCTTCAAGATATACAAAAATGGCTGCCGGCTGAAGGAAATCGTATGCCCTAGTCAGGACATGTTGGAACACTCTGTGAGGCATTACAGCTTTTAG 2079 0.4974 MSHSSGKPVSEVVGIDATFSDRFRDALTCDDNNNINKPDFRELDLGSPVSPLRTTRGPAASSSSSSSGSFSGRTGPTRKPESAQNNSNTNTHIHSNNNNSGELSGSSENSPTARKPGHTRSDSGSAPVPLIYSGQTATSPVMNVLPTGNICPSGKILKTGMTPNRSSRTSRSDVLGSGMGNYGHGSIMRGGGKAEPASTRGSGGGNEMVKRGGHVQSVDPEELKRLGNECYKRGNFVDALSLYDRAIAMSPASAAYRSNRAAALTGLGRLGEAVRECEEAVRLDPNYGRAHQRLASLFLRLGQVENARKHLCYPGMQPDPSDMQRLQVVEKHISKCGDVRRVGDWKSVLREVDAAVAAGADSSYQLFMCRAEAFLKLHQIDDAESILLHIPKSEPHTNSSSQARFFGMLCEAYSYFVRAQIEMALGRFENAVTAAEKASQNDSRNVEVAVLLNNVRMVARARVRGNDLFKSERYTEACLAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDSNQALHIQPNYTKALLRRAASNSKLERWEEAVKDYEILRKELPNDNEVAESLFHAQVALKKSRGEEVTNLKFGGEVEEVSGLEQFRAAISLPGVSVVHFEVASNSQCKQISPFVNTLCGRYPSINFLKVDIQQSPTVATAENVRIVPTFKIYKNGCRLKEIVCPSQDMLEHSVRHYSF 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02402 692 MobiDBLite consensus disorder prediction 185 206 - -
Gma13g02402 692 Pfam Tetratricopeptide repeat 413 442 IPR019734 GO:0005515
Gma13g02402 692 Gene3D Tetratricopeptide repeat domain 218 578 IPR011990 GO:0005515
Gma13g02402 692 Gene3D Glutaredoxin 585 691 - -
Gma13g02402 692 SMART tpr_5 412 445 IPR019734 GO:0005515
Gma13g02402 692 SMART tpr_5 220 253 IPR019734 GO:0005515
Gma13g02402 692 SMART tpr_5 526 559 IPR019734 GO:0005515
Gma13g02402 692 SMART tpr_5 492 525 IPR019734 GO:0005515
Gma13g02402 692 SMART tpr_5 254 287 IPR019734 GO:0005515
Gma13g02402 692 SMART tpr_5 458 491 IPR019734 GO:0005515
Gma13g02402 692 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 16 690 IPR044534 -
Gma13g02402 692 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 16 690 - -
Gma13g02402 692 MobiDBLite consensus disorder prediction 26 128 - -
Gma13g02402 692 MobiDBLite consensus disorder prediction 54 119 - -
Gma13g02402 692 SUPERFAMILY TPR-like 220 447 IPR011990 GO:0005515
Gma13g02402 692 CDD TRX_family 597 678 - -
Gma13g02402 692 SUPERFAMILY Thioredoxin-like 495 690 IPR036249 -
Gma13g02402 692 ProSiteProfiles TPR repeat profile. 220 253 IPR019734 GO:0005515
Gma13g02402 692 Pfam Thioredoxin 598 684 IPR013766 -
Gma13g02402 692 Pfam Tetratricopeptide repeat 226 286 - -
Gma13g02402 692 ProSiteProfiles TPR repeat profile. 492 525 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02402 Gma-Chr13 38764279 38767304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02402 457 602 U-box Gene Family AT3G07370 27.869 1.17e-08 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02402 13 38764279 38767304 Gma13g02402 13 38764279 38767304 ECH
Gma13g02402 13 38764279 38767304 Gma12g01500 12 31592540 31595665 PCT