Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02122 ATGGAGATCAAGAGTAGAGAGAGGATACAAGTGTCAATTGAAAAGGTGAGGAGAGACAGCACAGTTGAAGTTGAAGATGAAGAAGAGGAGGATGAAAGTGTGGTTGGTGGTGAGGGTGGTCTTGCAGAAGATGAGAAGAAGAAAGGTGGTGGAGGGAGTGGGAGAAGAGGGTCAAGTGGAGTTTCTCCACCTTCTTGTCAGGCAGAGATGTGTGGTGCTGATTTGACTGTTGCAAAGAGGTACCATCGCCGCCATAAGGTGTGTGAGCTTCATTCCAAGGCTCCTTCTGTGATGGTTGCAGGACTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCAAGAGCTGGCAGAGTTTGATGAAGCTAAAAGAAGCTGCCGGAGACGCTTGGCCAGACATAACGAGCGGCGCCGGAAAAGCAATGCTGAAACTTGCAATGAAGGATGCAGTGGAAGCAAAGGGCAGCACCCTACAGAAAGCCACTGCAGAAATGCTGATGTCTGGGGAAGAATTCAGATGAACATTGCAAAGAATTCTGGCTACAACTCCTTCCATATTAGATGA 564 0.4858 MEIKSRERIQVSIEKVRRDSTVEVEDEEEEDESVVGGEGGLAEDEKKKGGGGSGRRGSSGVSPPSCQAEMCGADLTVAKRYHRRHKVCELHSKAPSVMVAGLRQRFCQQCSRFQELAEFDEAKRSCRRRLARHNERRRKSNAETCNEGCSGSKGQHPTESHCRNADVWGRIQMNIAKNSGYNSFHIR 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02122 187 SUPERFAMILY SBT domain 64 144 IPR036893 GO:0003677|GO:0005634
Gma12g02122 187 MobiDBLite consensus disorder prediction 141 160 - -
Gma12g02122 187 Pfam SBP domain 66 139 IPR004333 GO:0003677
Gma12g02122 187 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 33 159 - -
Gma12g02122 187 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 33 159 IPR044817 GO:0003677
Gma12g02122 187 MobiDBLite consensus disorder prediction 144 158 - -
Gma12g02122 187 ProSiteProfiles Zinc finger SBP-type profile. 63 140 IPR004333 GO:0003677
Gma12g02122 187 Coils Coil 116 136 - -
Gma12g02122 187 MobiDBLite consensus disorder prediction 23 38 - -
Gma12g02122 187 MobiDBLite consensus disorder prediction 1 22 - -
Gma12g02122 187 Gene3D - 57 127 IPR036893 GO:0003677|GO:0005634
Gma12g02122 187 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02122 Gma-Chr12 42029662 42030771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02122 42 143 SBP-box Gene Family AT2G33810 62.745 6.74e-38 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gma12g02122 SBP 3.6e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02122 12 42029662 42030771 Gma13g02437 13 39145229 39146366 ECH
Gma13g02616 13 40965576 40967155 Gma12g02122 12 42029662 42030771 ECH
Gma12g02122 12 42029662 42030771 Gma15g00721 15 5942085 5943862 ECH
Gma12g02122 12 42029662 42030771 Gma12g02122 12 42029662 42030771 ECH