Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01981 ATGTCCAATACTCTGCAGCAACATCAACAGAGTCCCGAATCGAAGCGTCTCGATCCGGGTTCCAACGCTCGCCGGCCTGGACACCGGAGATCGGTATCCGCCGGAGCTCCGTTAATCTACTCCGGCGGAGCCACCTTACTCCCAAGCGGGAACATTTGTCCGTCCGGGAAGATCCTCAAACCGGGCTTGCCCTCGCGCGGGCCGAACCGGACTGATGTGTTGGGCTCCGGCACCGTGAACTACGGCCGGGGCAGCATAGTGCGAGGCGTCTCGGGCAATATTCCGGTGCCCGTGGGCGCACTGCCGCCTACGGTGAAGCCCGCGCTCAGCGGCTCCGATCCCGAGGAGTTGAAGAGGGCTGGGAATGAGTTGTATAGAGGCGGGAACTTTGCGGAGGCGCTGGCATTGTACGATCGCGCCATCGCCATCTCGCCGGGAAACGCCGCATGCCGAAGCAACCGCGCGGCGGCGCTTACGGCGCTCGGGAGGCTCGCCGAGGCCGCGAGGGAGTGCCTCGAGGCGGTGAAGCTGGACCTTGCTTATGCCAGAGCGCACAAGAGACTTGCTTCTCTTTATCTAAGGTTTGGACAGGTTGAGAATTCGCGGCAGCACCTGTGTCTCTCTGGGGTTCAAGAGGATAAGTCTGAGGAGCAGAAGCTGGTGTTGTTGGAGAAGCATTTGAATCGGTGCGCTGATGCGCGGAAAGTTGGTGACTGGAAGAGGGTGCTTAGGGAATCTGAGGCTGCCATTGCTGTTGGAGCAGATTTTTCGCCTCAGATTGTAGCTTGCAAGGTGGAAGCCTATTTAAAACTGCATCAACTTGAAGATGCTGAATCAAGTCTCTCAAATGTTCCGAAGTTGGAAGGTTGTCCTCCAGAGTGCTCTCAGACCAAGTTCTTTGGTATGGTTGGTGAAGCCTATGTTCCTTTTGTGTGTGCACAGGTTGAGATGGCCTTGGGGAGGTTTGAGAATGCTGTTGCGGCTGCAGAAAAGGCTAGCATGTTAGATTGCAGTAATGTTGAAGTTGGTAGGATTGTAAATGTTGTGAAAATGGTTGCAAGAGCTCGTTCAAGGGGCAATGAACTTTTCAGCTCTGACAAGTTTTCTGAAGCTTGTTCTGCTTATGGGGAGGGCCTTAAGTATGACAACTCCAACTATGTTCTATACTGCAATAGGGCAATTTGTTGGTCTAAACTTGGACTATGGGAACAATCGGTTCAAGACTGCAGCCAAGCTCTTAACATTCAACCAAATTACACCAAGGCCCTTTTCCGCAGGGCTGCGTCAAACACAAAGCTTGAAAGATGGGTAGAAGTTGTTAAAGATTACAAGGCCTTAAAACGTGAACTGCCTAACGACAATGAAGTTGCCGAGTCTCTTCGACAGGCTCAACTAGCATTAGAAAAATCTCGACAAATGGTATATGGTACTAAGTTTGGAGTTGAAGTTGAACAAATCTGTGCATTAGATAAATTTAAAGCTGCATTAGCCTCTGCAGGTGTATCGGTAGTATATTTCAAAGAGGCATCAAACGAACTATGTGAGGAATTATCTCCATTCATAAATACATTGTGTGTTAGATATCCCTCGGTGAAATTTATCAAGGTGGACGTGGAGGAGTGTCTAGCAATAGCAAAAGCTGAAAGCATAAGAAGTGTTCCAACCTTTAAAATTTACAAAAATGGAGAGAAGGTGAATGACATTATCCGGCCAACCCATCAATTATTAGAGGACTCAGTAAGAAAAAGTAGTAGTCTCTAG 1761 0.4974 MSNTLQQHQQSPESKRLDPGSNARRPGHRRSVSAGAPLIYSGGATLLPSGNICPSGKILKPGLPSRGPNRTDVLGSGTVNYGRGSIVRGVSGNIPVPVGALPPTVKPALSGSDPEELKRAGNELYRGGNFAEALALYDRAIAISPGNAACRSNRAAALTALGRLAEAARECLEAVKLDLAYARAHKRLASLYLRFGQVENSRQHLCLSGVQEDKSEEQKLVLLEKHLNRCADARKVGDWKRVLRESEAAIAVGADFSPQIVACKVEAYLKLHQLEDAESSLSNVPKLEGCPPECSQTKFFGMVGEAYVPFVCAQVEMALGRFENAVAAAEKASMLDCSNVEVGRIVNVVKMVARARSRGNELFSSDKFSEACSAYGEGLKYDNSNYVLYCNRAICWSKLGLWEQSVQDCSQALNIQPNYTKALFRRAASNTKLERWVEVVKDYKALKRELPNDNEVAESLRQAQLALEKSRQMVYGTKFGVEVEQICALDKFKAALASAGVSVVYFKEASNELCEELSPFINTLCVRYPSVKFIKVDVEECLAIAKAESIRSVPTFKIYKNGEKVNDIIRPTHQLLEDSVRKSSSL 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01981 586 MobiDBLite consensus disorder prediction 1 35 - -
Gma12g01981 586 CDD TRX_family 492 577 - -
Gma12g01981 586 SUPERFAMILY TPR-like 113 339 IPR011990 GO:0005515
Gma12g01981 586 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL4 6 582 - -
Gma12g01981 586 SMART tpr_5 352 385 IPR019734 GO:0005515
Gma12g01981 586 SMART tpr_5 114 147 IPR019734 GO:0005515
Gma12g01981 586 SMART tpr_5 386 419 IPR019734 GO:0005515
Gma12g01981 586 SMART tpr_5 148 181 IPR019734 GO:0005515
Gma12g01981 586 SMART tpr_5 420 453 IPR019734 GO:0005515
Gma12g01981 586 SUPERFAMILY Thioredoxin-like 395 579 IPR036249 -
Gma12g01981 586 Pfam Thioredoxin 490 571 IPR013766 -
Gma12g01981 586 Gene3D Glutaredoxin 471 584 - -
Gma12g01981 586 Pfam TPR repeat 121 162 - -
Gma12g01981 586 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 6 582 IPR044534 -
Gma12g01981 586 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Gma12g01981 586 MobiDBLite consensus disorder prediction 1 17 - -
Gma12g01981 586 Gene3D Tetratricopeptide repeat domain 112 470 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01981 Gma-Chr12 40399070 40402007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01981 128 199 Glycosyltransferase AT3G04240 33.333 8.09e-06 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01981 12 40399070 40402007 Gma12g01981 12 40399070 40402007 ECH
Gma13g02577 13 40628135 40630972 Gma12g01981 12 40399070 40402007 GST
Gma12g01500 12 31592540 31595665 Gma12g01981 12 40399070 40402007 PCT