Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01532 ATGGAAGGTAGGAGAGTGGAGAGGAAGAAAACATTGTTTGAGAGGGTGAGAAAGAATAGCACAGTGGATGAGGAAGTGGAAAATGAAGGGGAGGAGGAGGATGAAAGTGGTGTTAATATTACTGAAGAAGAGAAGAAGATAGGGGTTAGTAGTGGTGGTGGGAGAAGAGGGTCAAGTGGGGGTGGTGGAGGGGTTTCTCCACCTTCATGTCAAGCAGAGAGGTGTGGTGCTGATTTAACTGATGCAAAGAGGTACCATCGCCGCCACAAGGTGTGTGAGTTTCATTCCAAGGCACCTGTTGTGGTGGTTGCAGGACTGAGGCAGAGGTTTTGTCAGCAATGTAGCAGGTTCCATGATCTGGCGGAGTTTGACGAATCCAAGAGAAGCTGCCGCAGACGGTTGGCTGGACACAACGAACGGCGCAGGAAAACCAACCCGGAAGCTGCCAATGAGGGCAACAGCAAAGGCCAACACCCTAAGGAAACAACACATTGCAGGCTTGCAGATGAGAGGGGGAGAATTCAGATGAACCTAACAGGGAGTTCTGAATACAAGTCTTTCAACATCAGATGA 573 0.4956 MEGRRVERKKTLFERVRKNSTVDEEVENEGEEEDESGVNITEEEKKIGVSSGGGRRGSSGGGGGVSPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLAEFDESKRSCRRRLAGHNERRRKTNPEAANEGNSKGQHPKETTHCRLADERGRIQMNLTGSSEYKSFNIR 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01532 190 MobiDBLite consensus disorder prediction 134 172 - -
Gma12g01532 190 MobiDBLite consensus disorder prediction 1 24 - -
Gma12g01532 190 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 23 163 IPR044817 GO:0003677
Gma12g01532 190 MobiDBLite consensus disorder prediction 157 171 - -
Gma12g01532 190 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 23 163 - -
Gma12g01532 190 Gene3D - 60 131 IPR036893 GO:0003677|GO:0005634
Gma12g01532 190 ProSiteProfiles Zinc finger SBP-type profile. 67 144 IPR004333 GO:0003677
Gma12g01532 190 SUPERFAMILY SBT domain 68 148 IPR036893 GO:0003677|GO:0005634
Gma12g01532 190 Pfam SBP domain 70 143 IPR004333 GO:0003677
Gma12g01532 190 MobiDBLite consensus disorder prediction 1 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01532 Gma-Chr12 34177765 34179336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01532 1 190 SBP-box Gene Family AT3G15270 43.229 1.39e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gma12g01532 SBP 1.1e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02437 13 39145229 39146366 Gma12g01532 12 34177765 34179336 PCT
Gma12g01532 12 34177765 34179336 Gma13g02437 13 39145229 39146366 PCT