Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01530 ATGGCTGACATAGCAGGTCTGGCTGAGGCTGCAGGGGCAAGGTTTAGTTCATTGGAGCTCATTGGGCAGGGATCATTTGGCGACGTGTATAAAGGGTTTGACAAGGAGCTCAACAAAGAAGTTGCTATCAAAGTGATTGATTTGGAAGAATCAGAGGATGAAATTGAGGACATTCAGAAGGAAATTTCTGTTCTGTCGCAATGTCGATCTCCATACATTACTGAGTATTATGGTTCCTTTCTTAATCAAACTAAACTTTGGATAATAATGGAATACATGGCTGGAGGCTCTGTTGCTGATCTACTCCAATCAGGTCCTCCACTTGATGAAATGTCAATAGCTTGCATTCTACGTGATTTGCTTCATGCAATTGATTACCTTCATAATGAAGGAAAAATTCATAGAGACATTAAAGCTGCAAACATTTTATTGACTGATAACGGTGATGTAAAGGTTGCAGATTTTGGTGTTTCTGCACAGTTAACAAGAACTATATCAAGGAGAAAGACCTTTGTAGGAACACCGTTTTGGATGGCACCCGAGGTTATTCAAAATTCAGAAGGATATAATGAGAAGGCAGATATCTGGTCTCTGGGCATTACTGCGATTGAGATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCAATGAGAGTGCTTTTCATCATACCCCGAGAGAATCCACCACAACTAGATGAACACTTTTCTCGCTATATGAAAGAATTTGTTTCATTGTGCTTGAAGAAGGTTCCTGCTGAGGCAAGTAGGCCAAGTGCTAAGGAGCTTTTGAGACATCGTTTCATTCGGAATGCTAGGAAGAGTCCAAAGCTATTGGAGAGAATAAGGGAGCGTCCAAAGTACCAAATAAAGGAAGATCAGACAACACCTAGAAATGCCCCAAGGGGGATGGGGGAGGCATCTGATACTATTAAGGTTGCAAAAGATTTAAGGGGTGACGAAACTAATCAGCCTAGTGGCCAAGGTAAAACCCTGAGAAGTTCTGGATGGGACTTCAGCATTGGTGGATCACAGGGTACTGGAACCTTTCGTAGTGTGTCACGGCCACCTCAGTTTAGAGATAAGAAAACTGAAGTTTCGGATCATCAGCTTAACCAAAGAAAAATTCCAGAGAGTGGCTATCAAGGGGAATCTGGAAATAAAAGTGCACTTAATGAGTTGCTAGAAACTTCTTTTGGAAAAGATCTTGGAGTTCCCTACCATGATGAACATCCGGATAATCACCTAGAAAATCAGGATGAATTTTCTGGGAATGGATCAGGAACTGTTGTTATTCGATCTCCAAAAGGACCACAGCCATCAATGTTTCGTGACCAAAGTTCCCAGTCTAGCAGCAGCTATGCTTCTTTTGAAGATGTTTCTACTAGCGGAACTGTTGTTGTTTTGCATAGCCAGCATGACGATTCTGATTCTCCACAGACACCAAGGTCCCGACTGGGACTTAATAGCAGAAATTCAAATGCCTCACTGGAAGATAGTGCTACAAATCTTGTTGAGGCAAAGGCTGCTATCCAAGGCGGATTAAGGAAAGTGAATGTCCGGGAGAGATTTGCACTGGGAAAACTCAACAATGATGTACAGGATAGCAAGAGAGATCAAATGTCAAGCAGCTCTGATTCTTCAAGACCATCTCGTGAATATTTTGATGCACCAAAGGCATTTTCAAGATCACATTATTCTATTGATGATGAAGAAAGTGCCAAAATAATCTCATCCTCTGTGCCGCTATCCGTTTTGCTTATTCCTTCATTAAAAGAGGCCATTGCTGATGATCCAGATGGGTCAATAGTGCAAATTGTTATCAATGCTCTTGTAAACATGGAGAGTACAAAGCCCCAATCCTGTGATGTTTTTGTCAAAAAGTTGCTTCAGCAGTTGGCAAGTTCAAAGGAATCTTCATTTAAGGACCTGCAAGAACTTGCTGGCCAAATATTCAGCAAGACAAAGTCATCTGAAGAAACCCGAAATGCAGAGTCTGATAACAAGAAACAAAACAAGGAAGTCCATTCAAATAGCAATTTAAGCCCTCTTGCAAGATTTCTTCTATCAAGATGGCAAGGCCAAACCTCGCGGGATCTAAATCCAGCTTGA 2112 0.4171 MADIAGLAEAAGARFSSLELIGQGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSFLNQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHNEGKIHRDIKAANILLTDNGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRYMKEFVSLCLKKVPAEASRPSAKELLRHRFIRNARKSPKLLERIRERPKYQIKEDQTTPRNAPRGMGEASDTIKVAKDLRGDETNQPSGQGKTLRSSGWDFSIGGSQGTGTFRSVSRPPQFRDKKTEVSDHQLNQRKIPESGYQGESGNKSALNELLETSFGKDLGVPYHDEHPDNHLENQDEFSGNGSGTVVIRSPKGPQPSMFRDQSSQSSSSYASFEDVSTSGTVVVLHSQHDDSDSPQTPRSRLGLNSRNSNASLEDSATNLVEAKAAIQGGLRKVNVRERFALGKLNNDVQDSKRDQMSSSSDSSRPSREYFDAPKAFSRSHYSIDDEESAKIISSSVPLSVLLIPSLKEAIADDPDGSIVQIVINALVNMESTKPQSCDVFVKKLLQQLASSKESSFKDLQELAGQIFSKTKSSEETRNAESDNKKQNKEVHSNSNLSPLARFLLSRWQGQTSRDLNPA 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01530 703 Pfam Protein kinase domain 16 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01530 703 SUPERFAMILY Protein kinase-like (PK-like) 14 305 IPR011009 -
Gma12g01530 703 ProSiteProfiles Protein kinase domain profile. 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01530 703 MobiDBLite consensus disorder prediction 402 457 - -
Gma12g01530 703 MobiDBLite consensus disorder prediction 356 372 - -
Gma12g01530 703 MobiDBLite consensus disorder prediction 658 674 - -
Gma12g01530 703 MobiDBLite consensus disorder prediction 403 418 - -
Gma12g01530 703 MobiDBLite consensus disorder prediction 470 495 - -
Gma12g01530 703 CDD STKc_MST3_like 14 289 - -
Gma12g01530 703 Gene3D Transferase(Phosphotransferase) domain 1 12 303 - -
Gma12g01530 703 MobiDBLite consensus disorder prediction 373 387 - -
Gma12g01530 703 SMART serkin_6 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01530 703 MobiDBLite consensus disorder prediction 280 387 - -
Gma12g01530 703 MobiDBLite consensus disorder prediction 419 457 - -
Gma12g01530 703 MobiDBLite consensus disorder prediction 321 354 - -
Gma12g01530 703 MobiDBLite consensus disorder prediction 531 555 - -
Gma12g01530 703 MobiDBLite consensus disorder prediction 536 551 - -
Gma12g01530 703 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 701 - -
Gma12g01530 703 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Gma12g01530 703 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 701 - -
Gma12g01530 703 Coils Coil 41 68 - -
Gma12g01530 703 MobiDBLite consensus disorder prediction 655 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01530 Gma-Chr12 34057144 34074430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01530 1 700 MAP Kinase Kinase Kinase Kinase AT3G15220 64.815 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Gma12g01530 Pkinase 3.6e-66 CL0016