Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01527 ATGAACACAAGTGATGACAAGTTAAAAGTTGCAGCACAAGAAGGTGACATAAGCCTTCTTTACACACTAATTCAGGAGGATCTACACGTTTTGGACCACATGGATTTGACACCATTTGCTGAAACACCTTTGCATATTGTTGCATGTGTTGGACATCTCCAGTTTGCCACTGAGATTATGAGGTTGAAACCATCATTTGCTTCGAAGTTAAATCAGCAAGGATTCACTCCCATTCACCTCGATATGCAACATGGCCAAAAGAGAATGGTGCTTCGCTTTGTAGACATCAACAAAGACCTCGTTCGAGTCAAAGGAAGGGAGGGCCTAACTCCTTTTCATTTTGCAAGTCAAAAAGGAGAAATTGACCTTTTAGCTAACTTTCTCTTGGCTTGTCCAGATTCCATTGAAGATGTGACTGTTAGATGTGAGACTGCACTTCATATTGCATTGAGATCTCAACAGTATGAGGCTTTTCGAGTCTTAGTCGGGTGGCTCCAGAGAACACGCCAGAGAGGTGCAACTACATTAGAAAAAACAATACTAAACTGGAGGAATGAAGAAGGCAACACCATTTTGCACGTCTCAGCACTCATGAATGACTCAAAGGCAATTCGATTGTTGGTAAAGACTAAGGTGGATTTAAATGCCAAGAATTGGGAGAACTTAACAGCATTAGACATAGCAGCCAATGCAGAGGTAAAGATTGTGTTAGCTAAGGCTGGTGCAAAGCATGGTTCATCAATTACTAATGCTCCCACCTTTCCTGATAAACTAAGATCCAACATCACATTGATGGAAAAAATAATTATCTTCATACTTCGCATTAGAAGGGATATAACAGAAGACCAACGCAACGCGTTTCTGATAGTTGCTGCTCTTGTTGCGACCGCTACTTATCAATCAGCACTGAGCCCCCCTGGTGGAGTTTATCAGGCTAACGCCGGCGATAACAATACCAACTCTACTCCTTCCCTCAATTCTACAGTTGCTACAACTGCAACCCACGGTAATGCTGGGAAATCAGTGATGACTGTTGGCGATTTTCTGACCTTGTCAATTTTTAATACACTTTCGCTTTTGGTGTCAATTATGACAATGTTTATTCTAACTCCAAGTGGGACAGTAGGTAGTATATTGTCTGCGCCAATGTTTTTGTTTGTCTCCTGCTATCTTCATTCTATGAAGGTGATATCACCTGACAATGCTACCTCATTTGGTCATTATATTACGGCATCCTTATTCAGCATCTTGTACTTGGCAGCATCTTGGTCAATGGCCAAAGTGTACAAGAGACTTCAGCATCATGATAAGAATAGGGAAATGAAAACGTGGAATAGTATAGCAGGAAATAGATGGTAG 1359 0.4128 MNTSDDKLKVAAQEGDISLLYTLIQEDLHVLDHMDLTPFAETPLHIVACVGHLQFATEIMRLKPSFASKLNQQGFTPIHLDMQHGQKRMVLRFVDINKDLVRVKGREGLTPFHFASQKGEIDLLANFLLACPDSIEDVTVRCETALHIALRSQQYEAFRVLVGWLQRTRQRGATTLEKTILNWRNEEGNTILHVSALMNDSKAIRLLVKTKVDLNAKNWENLTALDIAANAEVKIVLAKAGAKHGSSITNAPTFPDKLRSNITLMEKIIIFILRIRRDITEDQRNAFLIVAALVATATYQSALSPPGGVYQANAGDNNTNSTPSLNSTVATTATHGNAGKSVMTVGDFLTLSIFNTLSLLVSIMTMFILTPSGTVGSILSAPMFLFVSCYLHSMKVISPDNATSFGHYITASLFSILYLAASWSMAKVYKRLQHHDKNREMKTWNSIAGNRW 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01527 452 ProSiteProfiles Ankyrin repeat region circular profile. 107 129 - -
Gma12g01527 452 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 11 430 - -
Gma12g01527 452 SUPERFAMILY Ankyrin repeat 8 231 IPR036770 -
Gma12g01527 452 ProSiteProfiles Ankyrin repeat profile. 187 219 IPR002110 GO:0005515
Gma12g01527 452 SMART ANK_2a 39 68 IPR002110 GO:0005515
Gma12g01527 452 SMART ANK_2a 107 137 IPR002110 GO:0005515
Gma12g01527 452 SMART ANK_2a 220 250 IPR002110 GO:0005515
Gma12g01527 452 SMART ANK_2a 73 102 IPR002110 GO:0005515
Gma12g01527 452 SMART ANK_2a 412 441 IPR002110 GO:0005515
Gma12g01527 452 SMART ANK_2a 187 216 IPR002110 GO:0005515
Gma12g01527 452 Pfam Ankyrin repeats (many copies) 181 228 IPR002110 GO:0005515
Gma12g01527 452 ProSiteProfiles Ankyrin repeat profile. 107 129 IPR002110 GO:0005515
Gma12g01527 452 PANTHER HOMEOBOX PROTEIN WARIAI 11 430 - -
Gma12g01527 452 ProSiteProfiles Ankyrin repeat region circular profile. 187 218 - -
Gma12g01527 452 Pfam Domain of unknown function 280 374 IPR026961 -
Gma12g01527 452 Gene3D - 2 257 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01527 Gma-Chr12 33818599 33820368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01527 5 397 Miscellaneous Gene Families AT4G10720 41.278 7.30e-99 300