LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma12g01522	ATGGCTCCGAGGGATATCAATAGATCTAACGTTGTTGTTGCCGGAGGATCCAACCCGACCCGTAAAGAGATCCGATACCGCGGCGTGAGGAAGCGGCCGTGGGGCCGCTACGCCGCCGAGATCCGCGATCCCGGCAAGAAGACGCGCGTCTGGCTAGGAACGTTCGACACCGCGGAGGAGGCGGCGCGTGCGTACGATGCGGCGGCGCGTGAGTTCCGCGGCGCAAAGGCTAAGACCAATTTCCCCACCCACGCGGAGCTGACGCACGCGGCGGCGCGTAGCCCCAGCCAGAGCAGCACGTTGGATTCGTCCTCTCCCCCGACGCCGCCGTTGGACCTCACTCTTGCCGCCCCACTCGCCGCCGGTGGCGCGTTGGTGTTCCCAGTGGCGCGGCCCGTGGTCTTCTTCGACGCGTTCGAGCGTGCCGAGGTGCGCGCGTCGTTCGATCTTCCCGTGGCGGCGTTCAGCGACTCGGACTCGTCCACGGTCATGGATTACGAGCGGGGCTCACGTCGGAGAGTGTTGGATCTTGACCTTAATGTCCCTCCTCCGCCCGAGGTTGCCTGA	567	0.6596	MAPRDINRSNVVVAGGSNPTRKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPTHAELTHAAARSPSQSSTLDSSSPPTPPLDLTLAAPLAAGGALVFPVARPVVFFDAFERAEVRASFDLPVAAFSDSDSSTVMDYERGSRRRVLDLDLNVPPPPEVA	188

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma12g01522	188	MobiDBLite	consensus disorder prediction	88	109	-	-
	Gma12g01522	188	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4	18	179	-	-
	Gma12g01522	188	PRINTS	Ethylene responsive element binding protein signature	26	37	IPR001471	GO:0003700\|GO:0006355
	Gma12g01522	188	PRINTS	Ethylene responsive element binding protein signature	48	64	IPR001471	GO:0003700\|GO:0006355
	Gma12g01522	188	Pfam	AP2 domain	25	74	IPR001471	GO:0003700\|GO:0006355
	Gma12g01522	188	MobiDBLite	consensus disorder prediction	90	109	-	-
	Gma12g01522	188	SUPERFAMILY	DNA-binding domain	25	83	IPR016177	GO:0003677
	Gma12g01522	188	Gene3D	AP2/ERF domain	24	84	IPR036955	GO:0003700\|GO:0006355
	Gma12g01522	188	ProSiteProfiles	AP2/ERF domain profile.	25	82	IPR001471	GO:0003700\|GO:0006355
	Gma12g01522	188	CDD	AP2	25	84	IPR001471	GO:0003700\|GO:0006355
	Gma12g01522	188	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	18	179	-	-
	Gma12g01522	188	SMART	rav1_2	25	88	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma12g01522	Gma-Chr12	33403982	33405219	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma12g01522	22	137	AP2-EREBP Transcription Factor Family	AT3G15210	66.165	1.71e-50	160

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Gma12g01522		AP2	1.6e-15	CL0081