Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01497 ATGACTAGTTGCTTTCATCTTTTCAGAAAGAAAGGATCTTCCTCAGGCACACAGTTGACCGGAGTTGATATAGATGTTTCAGAAATTCAGAATGTCAATATCTACACTTACAGAGAATTGCGAATTGCCACTGAAGGTTTTAGTTCTGCAAACAAGATAGGGCAGGGAGGTTTTGGAGCAGTCTATAAGGGAAAGCTGAGAAACGGTTCTTTGGCAGCTATAAAGGTTTTATCAGCTGAATCAAGACAAGGGATCCGGGAGTTCTTGACAGAAATCAAGGTGATCTCTAGTATAGAGCATGAGAATCTAGTCAAGTTACATGGATGCTGTGTGGAAGACAACCACAGGATTTTGGTATATGGCTATCTTGAGAACAACAGCCTAGCACAAACACTTATTGGTTCAGGCCATAGTAGCATCCAATTAAGTTGGCCTGTAAGGAGGAACATTTGCATAGGTGTTGCCCGGGGCCTTGCATTCCTTCATGAGGAGGTTCGGCCACGCATTATCCATAGAGACATAAAAGCAAGCAATGTACTACTTGACAAAGATCTCCAGCCCAAAATTTCAGATTTTGGCCTTGCAAAGCTTATTCCACCAAACCTGACCCATATTAGTACTCGTGTTGCTGGAACAGCTGGTTATCTAGCACCTGAATATGCAATCCGAAATCAAGTGACTACAAAATCGGATGTATATAGTTTTGGAGTTCTACTATTAGAAATTGTTAGTGGGAGACCTAACACAAACAGACGTTTACCTGTTGAAGAACAGTATCTTCTCACAAGGGTTTGGGATTTGTATGAGAGTGGAGAGGTAGAAAAACTGGTGGATGCTTTTCTAGAAGGAGACTTCAATATTGAGGAGGCAATCAGATTTTGTAAGATTGGTCTCCTTTGCACGCAGGATTCTCCTCAGCTCCGGCCTTCAATGTCCAGTGTGCTTGAGATGCTTTTAGGTGAAAAAGATGTGAATGAGGAGAATGTGACAAAACCAGGCATGATATTTGAATTTGTGGAAGCCAAAAGTGCAGGGAAACAAAAAGGCAAGGCAGAAGTGGATAGTAAATCTTCGTTGGCTGAAGGGAAGCAAGACGAGTCATCTTCATCAGGAACCATGAGCTCTTTTGCTACCATGACCTTCACAGCAATTTATGATAGAAGCAATTAG 1170 0.4188 MTSCFHLFRKKGSSSGTQLTGVDIDVSEIQNVNIYTYRELRIATEGFSSANKIGQGGFGAVYKGKLRNGSLAAIKVLSAESRQGIREFLTEIKVISSIEHENLVKLHGCCVEDNHRILVYGYLENNSLAQTLIGSGHSSIQLSWPVRRNICIGVARGLAFLHEEVRPRIIHRDIKASNVLLDKDLQPKISDFGLAKLIPPNLTHISTRVAGTAGYLAPEYAIRNQVTTKSDVYSFGVLLLEIVSGRPNTNRRLPVEEQYLLTRVWDLYESGEVEKLVDAFLEGDFNIEEAIRFCKIGLLCTQDSPQLRPSMSSVLEMLLGEKDVNEENVTKPGMIFEFVEAKSAGKQKGKAEVDSKSSLAEGKQDESSSSGTMSSFATMTFTAIYDRSN 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01497 389 SMART serkin_6 47 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01497 389 Pfam Protein kinase domain 49 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01497 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Gma12g01497 389 CDD STKc_IRAK 53 318 - -
Gma12g01497 389 ProSiteProfiles Protein kinase domain profile. 47 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01497 389 MobiDBLite consensus disorder prediction 346 373 - -
Gma12g01497 389 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 375 - -
Gma12g01497 389 Gene3D Phosphorylase Kinase; domain 1 21 122 - -
Gma12g01497 389 MobiDBLite consensus disorder prediction 346 361 - -
Gma12g01497 389 SUPERFAMILY Protein kinase-like (PK-like) 26 318 IPR011009 -
Gma12g01497 389 PANTHER RECEPTOR-LIKE KINASE 1 375 - -
Gma12g01497 389 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Gma12g01497 389 Gene3D Transferase(Phosphotransferase) domain 1 123 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01497 Gma-Chr12 30916574 30920678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01497 35 329 Receptor kinase-like Gene Family AT1G53420 55.932 1.04e-106 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma12g01497 Pkinase 7.8e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01497 12 30916574 30920678 Gma12g01497 12 30916574 30920678 ECH