LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma12g01490	ATGGATCCGACCAAGAAGCGCAAGCTCGACGAGAACGGCTTCATCAACAACGACTCCTCCGAGCCCCTCAAGCTCTCCCCCTCCGACGCCCGCAAGCTCATCGAGCGCTTCACCACTGACCAGCTCCTCGACATCCTCCAGGACACGGTGGCGCGCCACCCCGACGTCCTCGCTGCCGTGCGCGCTGTCTCAGACCCCGACGTCTCCCAGCGTAAGCTCTTCATCCGCGGCCTCGGCTGGGACACCACCACCGACGGCCTCCGCTCCCTCTTCTCCACCTACGGCGACCTCGAGGAGGCCGTCGTCATACTCGACAAGGCCACCGGCAAGTCTAAGGGCTACGGCTTCGTCACCTTCCGCCACGTTGACGGCGCGCTCCTCGCCCTCCGCGAGCCCAGCAAGCGCATCGACGGCCGCGTCACCGTCACGCAGCTCGCCGCCGCCGGAAACTCTGCGTTGAACGCCAACGCCGTCGACGTGGCTCTCCGTAAGATCTACGTCGCCAACGTGCCGCCAGACCTCCCCGCGGACAAGCTTCTTGCACACTTCTCCGTCTACGGTGAAATCGAAGAAGGACCGTTAGGGTTTGATAAACAGACTGGAAAATCGAAAGGGTTTGCTTTGTTTGTTTACAAGTCTCCAGAGGGGGCAAAGGCTGCGTTGATAGATCCAATGAAGACTGTGGAAGGGAGGCAGTTGAGTTGTAAGTTGGCGATTACTGATGGGAAGCAAGGGAAGCGGTCCGGGCCGGACTCGGGCCAGGCCCATCATGGGAATGTTCAGCACGGGCATGGGGATGGTGTGGGAGCAGGAATGGGGATACCTCCGAATTCGGGGTCGGGGTCGGGGCCCGGGCAGTATGGTGGGCCCGGGCATTACGGGCCTACGGTTGGGATGGGCTCTTATGGTGGTTTTGGTGGGCAGCCACCGATGGGCAATAATAACCATCCTCTGAATTCGTCGAATCCGGTACCAGGTTCTATGGCAGGTGCTGGTGGCTATGGTGGTGGGATGGGTGGGCCATATGGTGGATACGGTGGTGGGCCGGGATCAACGGGCTTTGCTGGTGCTGGTGGGATGGGAGCAGGAGGTGGAGGTGTTGGGGGCGGCGGGCTTGGTGGTGCTGGCGGTGGTTCTATGTATAGATTGCCAGGCTCGGGTGGAATGCCTGCTGGTGGTGGAGGTTATCCGGATAGTGGACACTATGGTTTATCAGCTTCATCTGGGTACCAGAATCAGCACCACCCTCCTTCTGGGGCTTCACCTGTGCCTAGGGTTCCGCCCATGTATCCCAACGTGCCCCCTTACTACTGA	1314	0.6088	MDPTKKRKLDENGFINNDSSEPLKLSPSDARKLIERFTTDQLLDILQDTVARHPDVLAAVRAVSDPDVSQRKLFIRGLGWDTTTDGLRSLFSTYGDLEEAVVILDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSALNANAVDVALRKIYVANVPPDLPADKLLAHFSVYGEIEEGPLGFDKQTGKSKGFALFVYKSPEGAKAALIDPMKTVEGRQLSCKLAITDGKQGKRSGPDSGQAHHGNVQHGHGDGVGAGMGIPPNSGSGSGPGQYGGPGHYGPTVGMGSYGGFGGQPPMGNNNHPLNSSNPVPGSMAGAGGYGGGMGGPYGGYGGGPGSTGFAGAGGMGAGGGGVGGGGLGGAGGGSMYRLPGSGGMPAGGGGYPDSGHYGLSASSGYQNQHHPPSGASPVPRVPPMYPNVPPYY	437

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma12g01490	437	Gene3D	-	47	153	IPR012677	-
	Gma12g01490	437	MobiDBLite	consensus disorder prediction	400	437	-	-
	Gma12g01490	437	MobiDBLite	consensus disorder prediction	420	437	-	-
	Gma12g01490	437	PANTHER	UBP1-ASSOCIATED PROTEIN 2C	1	404	-	-
	Gma12g01490	437	SUPERFAMILY	RNA-binding domain, RBD	61	146	IPR035979	GO:0003676
	Gma12g01490	437	SUPERFAMILY	RNA-binding domain, RBD	152	269	IPR035979	GO:0003676
	Gma12g01490	437	CDD	RRM_RBM24_RBM38_like	163	238	-	-
	Gma12g01490	437	SMART	rrm1_1	72	144	IPR000504	GO:0003723
	Gma12g01490	437	SMART	rrm1_1	164	236	IPR000504	GO:0003723
	Gma12g01490	437	MobiDBLite	consensus disorder prediction	1	23	-	-
	Gma12g01490	437	PANTHER	GEO13361P1-RELATED	1	404	-	-
	Gma12g01490	437	CDD	RRM_RBM24_RBM38_like	71	146	-	-
	Gma12g01490	437	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	163	240	IPR000504	GO:0003723
	Gma12g01490	437	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	71	172	IPR000504	GO:0003723
	Gma12g01490	437	Gene3D	-	154	308	IPR012677	-
	Gma12g01490	437	MobiDBLite	consensus disorder prediction	404	418	-	-
	Gma12g01490	437	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	73	140	IPR000504	GO:0003723
	Gma12g01490	437	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	165	232	IPR000504	GO:0003723
	Gma12g01490	437	MobiDBLite	consensus disorder prediction	241	324	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma12g01490	Gma-Chr12	30704951	30712256	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma12g01490	159	356	C2H2 Transcription Factor Family	AT2G19380	27.488	3.75e-11	63.2

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma06g02105	06	36262275	36267233	Gma12g01490	12	30704951	30712256	ECH
	Gma12g01490	12	30704951	30712256	Gma12g01490	12	30704951	30712256	ECH