Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02173 ATGGTTTTGTCTTGGACTAGAAGAAACGTTTTCCGCCGTGCAAAGAAGGAGAAGGAACAAAGTCAACTATTAGAAGTTGAGGTTGTGATTCCCAACCACTTTCGCTGTCCGGTGAGTTTGGAGCTGATGACAGATCCGGTGACTTTATCAACCGGCATTACCTACGACCGTGTGAGCATCGAGAAGTGGATCGAGGGAGAAAACAGAACCTGCCCCGTCACCAACCAGGTGCTGACAACCTTCGACCTCATCCCCAACCATGCCATTCGCATGATGATTCAGGATTGGTGCGTCCAAAACAGTTCTTATGGGATTGAAAGAATCCCCACTCCTCGTATTCCCATCTCCAGCTACGAGGTATCCGACACTTGTACGAGGATCTTGTCGGCTTGCCAGCGTGGGGACAATGAGAGGTGTCAGGAGTTGGTTGGAAAGATTAAGGTTTGGGGTAGAGAGAGTGAGAGGAACAAGAGGTGCATAGTTGGTGCTGGTGCTGGTGCTGTTCTTGCATATGCCTTTGATTGTTTCTCAAGTAACTCTATTGATAAGCATGTGGTTGTTTTGGAGGAGGTTTTGGAGGTGATGACATGGATGATCCCATTTGGGGAAGAGGGTGTTTCTAAATTGAGTTCAAGAGCTTCTTTGAATTCATTGGTTTGGTTTCTAGAAGGGAAAGACCTTGCATCAAGGCAAAGTGCTGCTTTGTTGCTTAAAGAAGTGTGTGTGCAAGAATTGGCCAAGGTTGGAAATGTTGTTGAGGCTTTGGTTAAGATGCTTAGGGAGCCTATTGGGAGTAGTACTTCCACAAAGGCTTGTTTGGCAACAATTTTTAACTTGGTTTCTTCAGCGGCTGCGAATAGAGAGGGGATTGTTCAAAGATTTGTGGAGTTGGGTTTGGTTTCACTTTTGCTTGAGGCTATTGTTGATGGAGAAAAAGGGGTGTGTGAGAAGGCACTTGGGGTGTTGGATTGCATTTGTGATTGCCAAAAGGGGAAGGAGGTTGTTGAAAGCAATGCTCTTGCCTTGCCTCTTGTTGTTAAGAAGCTTTTGAGGGTGTCACCATTGGCTTCAAGTTTTGCTGTGTCTATTCTAAGGAAGATTTGTGACAAGAGGGAGGAAGGGGTTCTGGTTGAGGCACTTCAAGTTGGGGTTTTTCAGAAGCTCTTGGTTATGCTGCAGGTTGGGTGTGATGAGAGCACCAAGGAGAATGCTACCCGGTTGTTGAAACTGTTGAATGGTTACAGGAACAAAGCGGAGTGCACTGACTCATCATCATTGGATTTCAAGCATCTTAAGAAGCCATTCTAA 1308 0.4587 MVLSWTRRNVFRRAKKEKEQSQLLEVEVVIPNHFRCPVSLELMTDPVTLSTGITYDRVSIEKWIEGENRTCPVTNQVLTTFDLIPNHAIRMMIQDWCVQNSSYGIERIPTPRIPISSYEVSDTCTRILSACQRGDNERCQELVGKIKVWGRESERNKRCIVGAGAGAVLAYAFDCFSSNSIDKHVVVLEEVLEVMTWMIPFGEEGVSKLSSRASLNSLVWFLEGKDLASRQSAALLLKEVCVQELAKVGNVVEALVKMLREPIGSSTSTKACLATIFNLVSSAAANREGIVQRFVELGLVSLLLEAIVDGEKGVCEKALGVLDCICDCQKGKEVVESNALALPLVVKKLLRVSPLASSFAVSILRKICDKREEGVLVEALQVGVFQKLLVMLQVGCDESTKENATRLLKLLNGYRNKAECTDSSSLDFKHLKKPF 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02173 435 SUPERFAMILY RING/U-box 22 106 - -
Gma11g02173 435 Pfam U-box domain 30 101 IPR003613 GO:0004842|GO:0016567
Gma11g02173 435 ProSiteProfiles U-box domain profile. 29 103 IPR003613 GO:0004842|GO:0016567
Gma11g02173 435 SMART Ubox_2 33 96 IPR003613 GO:0004842|GO:0016567
Gma11g02173 435 PANTHER WDSAM1 PROTEIN 16 435 IPR045185 GO:0061630
Gma11g02173 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 107 IPR013083 -
Gma11g02173 435 CDD RING-Ubox_PUB 34 76 IPR045210 -
Gma11g02173 435 Gene3D - 119 417 IPR011989 -
Gma11g02173 435 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 21 16 435 - -
Gma11g02173 435 SUPERFAMILY ARM repeat 125 411 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02173 Gma-Chr11 36834075 36835760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02173 25 435 U-box Gene Family AT5G37490 46.172 4.30e-121 357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00397 18 3584669 3585964 Gma11g02173 11 36834075 36835760 GST
Gma11g02173 11 36834075 36835760 Gma14g02069 14 51832569 51835573 PCT
Gma11g02173 11 36834075 36835760 Gma02g02298 02 49047249 49048634 PCT
Gma14g02069 14 51832569 51835573 Gma11g02173 11 36834075 36835760 PCT
Gma02g02298 02 49047249 49048634 Gma11g02173 11 36834075 36835760 PCT