Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00885 ATGGATAATGATAATAATGTTCATGTGAGGTTCTTATTCTTTACATCACTATTCTTTTTCTTAACAGCATCCATTAGTGCTCAAAATAACAACACCAAACACGAAGAGTGTAGCCAGCCATACAGCTGCGGACAGTATTCCATATACTACCCTTTCTGGGGAGGGATCAGACCCAATTATTGTGCCAGCAATGACCAATTGAAGCTCCAATGCGAGGGTAATCAAAACACCACCATTCAACTTGGTTCACAAAGTTTCCAAGTGCTTCACTTTGATGATCCAGTGCATTACACCTTGACCATGGTTCGAACAGGCCTCATCTATGATCATTGTTCTTCCTCGGCCTTAACCAACACTTCCTTCAACTCGAGTCTCTTTCGTTACTCGCAAAATGTTACCAACATCACCATCTTCTATGGTTGTCCTAGCTCCGTGTTTGCGAATAGGAATTACTCTTTTCCATGCAAGGAAGATCACAATATGAGTGCTTTCTATGGGGACCCCGAAACTGCAAGAGTTCAAGACTGTGAAGGACCTAGGATTGAAGTGCAAGTATCAAAGGAACCTGTGCTTGGTGAAGGAATTGAAGGGCTGAACAAAGCTTTGAGTGAAGGGTTCAGAGTGCATCTTATTTCAGAGGCTCAAGTTCAACAGTGCTTAGAATGCGTTGTAAGTAATGGAACATGTGGGGCTAATGATGAGTCTCAGTTTACATGTTTTTGCCAGGATGGAACTGAAGGTTTAGATTGTTCTGATCATCATAGTAATAAATGGAATTGGGAAAGGAAGGTTGGTATAGGCGTTTCTGCTGCTGTGCTCGGGGCAATTGTAGTCAGCATTGGCTTTTATATCTGTAGTCGTCAGAAGAAGAAGAAAAATCTTCATGCAGTATCATCATCTGTACAATCTAAAGAAACCTCTTATAGTTCTTCTATAGAAGATACTGAGAAGGGATGCACATACTTTGGAGTCCATTTCTTCACTTATAGTGAACTTGAAGAGGCCACCAACTTCTTTGATCCTGCCAGAGAACTAGGAGATGGAGGATTTGGAACTGTGTATTTTGGCAAACTTCACGATGGACGTGTAGTTGCAGTGAAGAGAATGTACGAGAACAGTTATAGAAGAGTGGAGCAATTCGTGAATGAAGTAGAGATCCTAACAGGCCTACACCACCAAAACCTCGTGTCACTGTACGGATGCACATCTCGACACAGCAGAGAACTTCTGCTCGTATACGAATACATTCCAAATGGAACCGTTGCTGATCACCTCCACGGCCAAAGAGCGAAACCTGGCACACTTGCTTGGCACACAAGAATGAACATTGCCATAGAGACTGCTAGTGCACTGGTGTATCTCCACGCCTCTGAAATCATCCACAGGGACGTGAAAACGAATAACATTCTCCTCGACAATCACTTCAGTGTGAAAGTAGCGGATTTTGGCCTCTCGCGTCTCTTGCCAACGCACGCCACACACGTTTCCACCGCGCCACAAGGGACTCCAGGTTATGTGGATCCTGAGTACAATGAGTATTACCAACTCACTGATAAGAGTGATGTTTATAGCTTTGGAGTTGTGTTGATTGAGCTCATATCATCGATGCCTGCGGTTGATATCTCGAGGCGTAGGCATGAGATAAACCTGTCCAATATGGCCATTAAGAAGATACAAAGTGGGGCATTGCATGAGATTGTGGACACTACTCTTGGGTTTGAGACGGATTTCAAGGTGAGGAAAATGATCAGTGCTGTGGCTGAGTTGGCCTTTCAGTGCTTGCAGAGTTCAAAAGATGTGAGGCCCTCTATGGCAGAAGTGTTGGATAGGCTAGAGGATATTAGAAGTGATGGGAGTCATAGGAGCAAGCATGAGGTGCTAGATATATCAGAAGATGATGCTGCTTTGCTCAAGAATGTGCCTCCTCCACCTTCACCTGATTCACATTTGGTGACCATTTCTAATTCTACACCACCAAATGATAGCCAGTGA 1992 0.4378 MDNDNNVHVRFLFFTSLFFFLTASISAQNNNTKHEECSQPYSCGQYSIYYPFWGGIRPNYCASNDQLKLQCEGNQNTTIQLGSQSFQVLHFDDPVHYTLTMVRTGLIYDHCSSSALTNTSFNSSLFRYSQNVTNITIFYGCPSSVFANRNYSFPCKEDHNMSAFYGDPETARVQDCEGPRIEVQVSKEPVLGEGIEGLNKALSEGFRVHLISEAQVQQCLECVVSNGTCGANDESQFTCFCQDGTEGLDCSDHHSNKWNWERKVGIGVSAAVLGAIVVSIGFYICSRQKKKKNLHAVSSSVQSKETSYSSSIEDTEKGCTYFGVHFFTYSELEEATNFFDPARELGDGGFGTVYFGKLHDGRVVAVKRMYENSYRRVEQFVNEVEILTGLHHQNLVSLYGCTSRHSRELLLVYEYIPNGTVADHLHGQRAKPGTLAWHTRMNIAIETASALVYLHASEIIHRDVKTNNILLDNHFSVKVADFGLSRLLPTHATHVSTAPQGTPGYVDPEYNEYYQLTDKSDVYSFGVVLIELISSMPAVDISRRRHEINLSNMAIKKIQSGALHEIVDTTLGFETDFKVRKMISAVAELAFQCLQSSKDVRPSMAEVLDRLEDIRSDGSHRSKHEVLDISEDDAALLKNVPPPPSPDSHLVTISNSTPPNDSQ 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00885 663 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 11 653 IPR044652 -
Gma08g00885 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Gma08g00885 663 MobiDBLite consensus disorder prediction 633 663 - -
Gma08g00885 663 MobiDBLite consensus disorder prediction 649 663 - -
Gma08g00885 663 Pfam Protein kinase domain 342 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00885 663 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524
Gma08g00885 663 ProSitePatterns EGF-like domain signature 1. 239 250 IPR000742 -
Gma08g00885 663 SUPERFAMILY Protein kinase-like (PK-like) 320 614 IPR011009 -
Gma08g00885 663 Gene3D Phosphorylase Kinase; domain 1 310 415 - -
Gma08g00885 663 Pfam Wall-associated receptor kinase C-terminal 169 244 IPR032872 -
Gma08g00885 663 SMART serkin_6 339 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00885 663 Pfam Wall-associated receptor kinase galacturonan-binding 37 93 IPR025287 GO:0030247
Gma08g00885 663 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 11 653 - -
Gma08g00885 663 Gene3D Transferase(Phosphotransferase) domain 1 416 627 - -
Gma08g00885 663 ProSiteProfiles Protein kinase domain profile. 339 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00885 Gma-Chr8 7323044 7327301 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00885 26 662 Receptor kinase-like Gene Family AT1G25390 42.771 3.25e-151 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gma08g00885 Pkinase 9.2e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00885 08 7323044 7327301 Gma08g00885 08 7323044 7327301 ECH