Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00884 ATGATGACTCCAAACTTGAACTTGGAAATCGAAAATCATTCAGAAGGCAGCAGCCAAGTGGCTTCAAATGTATCCTTGCATGAAGCATCTCATGATCTTACAAAGGGCAGCACCACCACTTCCTCCTGTCTCACAAAGGATGAAACTGATCCAGGTTTCATTACCCTTGACTTGACACTCAACTTCAATAATTCCGGTGATGGCGAGTTGAAAGTCTCGAGTGATGCTAGCAGTGAAGTTGGAGCTGAAGCTCCTGCTTCAGCATCAGCAACTCCAAGGGTTTTCTCTTGTAACTACTGCAGGAGGAAGTTCTATAGCTCTCAGGCATTAGGGGGTCATCAAAATGCACACAAAAGGGAGAGGACGATGGCTAAGCGCGCAATGCGAATGGGGATGTTCACTGAGAGGTTTACAAGCTTGGCATCTCTACCTCTTCATGGTTCACCTTTCAGGTCTCTTGGCCTTGAAGCTCATTCTGCAATGCACCGAAGACACGTGCCATCCTCCGTGACAGCACTGAGGGCTCCTGATATGAGAGCTGCTGCAAAATTTGAGAGAAACCAATTTGGATCACTGGTTTTCATGGAAGATGATGATGTTGGATTCTTTTGGCCTGGCAGTTTCAGACAGGTAGACCAACAAGGAGCTGGTGATGTTAATGTAGGACATGCTCAAAGTTCAAATGCTAGTTTAGCTCCAATGGTGCCTCCTCCACCACAAGCTTCTGCATCTCCTGATCTCACATTGAAGCTTTAA 756 0.463 MMTPNLNLEIENHSEGSSQVASNVSLHEASHDLTKGSTTTSSCLTKDETDPGFITLDLTLNFNNSGDGELKVSSDASSEVGAEAPASASATPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMRMGMFTERFTSLASLPLHGSPFRSLGLEAHSAMHRRHVPSSVTALRAPDMRAAAKFERNQFGSLVFMEDDDVGFFWPGSFRQVDQQGAGDVNVGHAQSSNASLAPMVPPPPQASASPDLTLKL 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00884 251 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Gma08g00884 251 PANTHER ZINC FINGER PROTEIN JAGGED 4 251 IPR045320 GO:0003700
Gma08g00884 251 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Gma08g00884 251 PANTHER ZINC FINGER PROTEIN 3-RELATED 4 251 - -
Gma08g00884 251 MobiDBLite consensus disorder prediction 1 22 - -
Gma08g00884 251 Gene3D Classic Zinc Finger 74 144 - -
Gma08g00884 251 SUPERFAMILY beta-beta-alpha zinc fingers 93 123 IPR036236 -
Gma08g00884 251 MobiDBLite consensus disorder prediction 215 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00884 Gma-Chr8 7306101 7306856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00884 89 251 C2H2 Transcription Factor Family AT1G66140 44.271 5.14e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma08g00884 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00884 08 7306101 7306856 Gma08g00884 08 7306101 7306856 ECH