Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00883 ATGATTGGAAGTAAAGATCGTTCTGCTGACTTTGAAGGTGAGAACTCCAGGAGCAAGCTTTCAAGGCACAATTTTGAGGCCAACAAGGAGTACCCAGATGAAAAAGGTGTTGAATTTCTGAGGGATTCATCAGAAGTGGGTGGTTGTGGTGGCAGCTCAGGGTTGCAAGAGTTGACCCTCAGCTACCTTTGTGACAACCCAAAATTCAATCTTGCTGAGAAAGAGATTCCTGGTAAAAGCTTGTTGGAGAAAATGAGCCACAAAGGTAAAGAGGTTGTGGTATGTGAGAATTCATATCAAGATGGGAAATGGGTGGAAAGAGATTTCCTCAGCCTGAGTGAGCCAAGAGAAGATTCTTCAAAGAGATCCCTTGAGGAAGTTGTTGAGAGAGAGAGTAATAGGGAGAAGAAGCCAAAATTAGAGATTCTCAACCTCTCTCTTGCTTTGCCTGATGTGTCACTTTCCCTCACAGCCTCAAACGCCTTGCAAAACGGTGGTGATCATCAACAACAAGTTAGGACTAATCCTTGCAGGCCATCATCCACTACTCACACTTCATATTCCAATGACTACACTGCAGCTTCTTTGTCTTACTCTTATTCCCACCCTTTCTCTCACAACCCAAGTTGTTCACTCACCCACAATTCAACTGATATGTTTGATTACTCAGTGAGCAAAGATGACCAAATTTGGAACTGTGGAGAGGGAACTAATGGCTCAGTGCATAGTAGGTTCAAGCCAATTAGAGATGGCTTGGTTGGTTTATCCAACCATGGTGGTGGTGGTGGTATTAGTTCCTTTATGCAAGGTAATAATAATAGTCAGTATAAAACTACTACTAGTTCAGATAACCATTCTTTTTTCCCTTCAGAGTTGCCAGCAAGGCCAAGGTTTGAGGCTCAGTCAGGGGACTCAAGAGGGAGGAATTCTGAGAATCTGAGAGTCTTGGATGATGGGAAGGCAAGGAAGATTTCTAGGCCAGAGAGGATTGTTAGGGAAATTGTTTCAGAGTCTATACCTGTCATGACATTGACAATTCAGGAGCTTACTGATGATGTCATAGCATCAACTAAGGAATACTTGAGGAATCTCATTGAGAAGCCTGAGAAGAAAGAGGAACTGGTAAGCCTGCAAAGCCGGCTCGAGAGAAGATCTGACCTTACCAAGGAGAGTCTTTCAAAGTGCCATAAGGTGCAATTAGAGGTTTTAGTGGCTGTCAAGATGGGGCTTGCTAGCTTCCTATCTAGTCAGATTCAGTTGTCTGAGATGGTAGAGGTTTTCTTGTTTAAGAGGTGTAGGAATGTAACCTGCAAGCATTTGCTTCCTGTTGATGATTGTGACTGCAAGATTTGCTCAGGGAACAAGGGCTTTTGCAGTTCTTGCATGTGTCCTGTCTGTTTGAACTTTGATTGTGCAAGCAACACTTGTAGTTGGATTGGATGTGATGTTTGTTCACATTGGTGCCATGCTACTTGTGGCATTCAGAGGAATCTTATCAAGCCTGGGCCTAGCTTGAAGGGGCCTTCAGGGACCTCGGAGATGCAGTTTCATTGTATTGGCTGTGGACATGCCTCAGAAATGTTTGGTTTCGTTAAGGACGTCTTCGTGTGTTGCGCAAAGGATTGGGGGCTTGAAACCTTGATGAAAGAGCTTGACTGTGTAAGGAAGATCTTCATGGGAAGTGAAGATCGCAAAGGGAAGGAATTGCATGTTAAAACTGATGACATGCTATTAAAGCTTCAAACTAGAATGATATCTCCTTCGGATGCCAGCAGTTACATCATGCAATATTTCAGCTATGCGGACAGCATGCCAGACTTTCCTGCTTCTGGTATTTCTTCAAAGGATTTGTCAGCCTCTCAATCTAACCTTACAAAGGATACACCATCTCTTTCAAAACCTAATTCTCTATTACCAAAATATGGTTATGACATGGGCTATTCTAGGTCACATCCTGATGCCATGTCATGTGATCTACTTCAGAAAGACCTCAAAGCTTCCATCTTAAGTGAACTGAAAAATGAGGCTGATTTTCATTTGGGGGCCTTATTAAGGAAAGGTGGACTTGAAAGTTTGGAGAGCATTGTGAGGATAAAGGAGGCAGAAGCCAGAATGTTTCAAACCAAGGCAGATGAAGCAAGAAGAGAGGCAGAAGGGTTCCAGAGGATGATCAGGACGAAGACTGCGCAGATGGAAGAAGAGTACGCCGAAAAGCTTTCCAAACTCTGTTTGCATGAGACCGAGGAAACGCAGAGGAAGAAATTGGATGAACTGAAAGTCTTGGAAAATTCTTATTTTGATTACTATAAGATGAAAAAGAGAATGCAAGATGAGATTGATGGTTTGTTGCGGAGAATGGAGGCAACAAAGCAGCAATGGGTTTAA 2385 0.4306 MIGSKDRSADFEGENSRSKLSRHNFEANKEYPDEKGVEFLRDSSEVGGCGGSSGLQELTLSYLCDNPKFNLAEKEIPGKSLLEKMSHKGKEVVVCENSYQDGKWVERDFLSLSEPREDSSKRSLEEVVERESNREKKPKLEILNLSLALPDVSLSLTASNALQNGGDHQQQVRTNPCRPSSTTHTSYSNDYTAASLSYSYSHPFSHNPSCSLTHNSTDMFDYSVSKDDQIWNCGEGTNGSVHSRFKPIRDGLVGLSNHGGGGGISSFMQGNNNSQYKTTTSSDNHSFFPSELPARPRFEAQSGDSRGRNSENLRVLDDGKARKISRPERIVREIVSESIPVMTLTIQELTDDVIASTKEYLRNLIEKPEKKEELVSLQSRLERRSDLTKESLSKCHKVQLEVLVAVKMGLASFLSSQIQLSEMVEVFLFKRCRNVTCKHLLPVDDCDCKICSGNKGFCSSCMCPVCLNFDCASNTCSWIGCDVCSHWCHATCGIQRNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFVCCAKDWGLETLMKELDCVRKIFMGSEDRKGKELHVKTDDMLLKLQTRMISPSDASSYIMQYFSYADSMPDFPASGISSKDLSASQSNLTKDTPSLSKPNSLLPKYGYDMGYSRSHPDAMSCDLLQKDLKASILSELKNEADFHLGALLRKGGLESLESIVRIKEAEARMFQTKADEARREAEGFQRMIRTKTAQMEEEYAEKLSKLCLHETEETQRKKLDELKVLENSYFDYYKMKKRMQDEIDGLLRRMEATKQQWV 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00883 794 MobiDBLite consensus disorder prediction 268 291 - -
Gma08g00883 794 MobiDBLite consensus disorder prediction 268 288 - -
Gma08g00883 794 MobiDBLite consensus disorder prediction 163 186 - -
Gma08g00883 794 CDD PHD_OBE1_like 462 521 - -
Gma08g00883 794 Coils Coil 744 764 - -
Gma08g00883 794 Coils Coil 772 792 - -
Gma08g00883 794 Pfam Coiled-coil region of Oberon 654 783 IPR032535 -
Gma08g00883 794 MobiDBLite consensus disorder prediction 115 134 - -
Gma08g00883 794 PANTHER PROTEIN OBERON 3 1 794 - -
Gma08g00883 794 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 345 367 IPR004082 -
Gma08g00883 794 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 384 399 IPR004082 -
Gma08g00883 794 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 423 444 IPR004082 -
Gma08g00883 794 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 469 489 IPR004082 -
Gma08g00883 794 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 542 561 IPR004082 -
Gma08g00883 794 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 690 710 IPR004082 -
Gma08g00883 794 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 729 751 IPR004082 -
Gma08g00883 794 MobiDBLite consensus disorder prediction 1 36 - -
Gma08g00883 794 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 794 IPR004082 -
Gma08g00883 794 Coils Coil 696 730 - -
Gma08g00883 794 Pfam PHD - plant homeodomain finger protein 432 556 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00883 Gma-Chr8 7292437 7296928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00883 354 529 PHD Gene Family AT5G57380 25.000 7.85e-08 53.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00883 08 7292437 7296928 Gma08g00883 08 7292437 7296928 ECH