LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma07g01935	ATGGACACAAGCAGGTATGAGGGAAAAAGGGTCTTGAGGTACAAAGAGGAAGATGAAAATGATGATGATGAAGAAGAAGAAGAGGTGAGTGAGGTGGGTTTTGGAGCAGACAGAAGAAGGAATAAGAGAGTAATGAGAGATCTCCATGGAAAGAGATCAGGGTCCAAAGGTGGAGGCTCAATGCCACCTTCTTGTCAAGTGGATAATTGTGATGCTGATCTGAGTGAAGCTAAGCAGTACCACAGAAGACACAAGGTTTGTGAGTACCATGCCAAAGCTCCTTCCGTACACATGGCAGGGCTGCAACAAAGGTTTTGCCAACAATGTAGCAGGTTAATCTTTGCTGTGAATTCTGCCTGA	360	0.45	MDTSRYEGKRVLRYKEEDENDDDEEEEEVSEVGFGADRRRNKRVMRDLHGKRSGSKGGGSMPPSCQVDNCDADLSEAKQYHRRHKVCEYHAKAPSVHMAGLQQRFCQQCSRLIFAVNSA	119

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma07g01935	119	PANTHER	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3	16	111	-	-
	Gma07g01935	119	MobiDBLite	consensus disorder prediction	32	53	-	-
	Gma07g01935	119	Pfam	SBP domain	65	112	IPR004333	GO:0003677
	Gma07g01935	119	ProSiteProfiles	Zinc finger SBP-type profile.	62	119	IPR004333	GO:0003677
	Gma07g01935	119	PANTHER	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	16	111	IPR044817	GO:0003677
	Gma07g01935	119	SUPERFAMILY	SBT domain	63	112	IPR036893	GO:0003677\|GO:0005634
	Gma07g01935	119	MobiDBLite	consensus disorder prediction	1	64	-	-
	Gma07g01935	119	MobiDBLite	consensus disorder prediction	1	17	-	-
	Gma07g01935	119	Gene3D	-	55	115	IPR036893	GO:0003677\|GO:0005634

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma07g01935	Gma-Chr7	40611444	40613388	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma07g01935	1	112	SBP-box Gene Family	AT2G33810	47.321	9.18e-23	84.7

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	SBP	Gma07g01935		SBP	8.2e-20	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma07g01935	07	40611444	40613388	Gma15g00721	15	5942085	5943862	PCT
	Gma07g01935	07	40611444	40613388	Gma13g02106	13	36178951	36180838	PCT