Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02156 ATGGATAACTACTACCATCAACACCACCACCCTCACTTTGACAACAGCAATAACAATGAACCACATTTACCTCCTGGCTTCAGATTCCACCCCACAGATGAGGAACTCATCACATACTACCTCCTCAAGAAGGTTCTAGATAGCTCCTTCACTGGCCGAGCCATAGTTGAAGTCGACCTCAACAAGTGTGAGCCATGGGAGCTTCCTGAGAAAGCAAAGATGGGTGAGAAGGAATGGTACTTCTATAGCCTTCGTGACCGAAAGTACCCAACTGGATTACGCACCAATAGGGCCACCGAAGCTGGTTATTGGAAAGCCACTGGAAAAGACAGAGAGATCTACAGCTCCAAAACTTGCTCGCTCGTTGGCATGAAGAAAACCTTGGTTTTTTATAGAGGAAGAGCTCCGAAGGGTGAAAAAAGCAACTGGGTCATGCACGAGTATCGCTTAGAAGGCAAATTCGCTTACCACTATCTCTCTAGAAGCTCCAAGGATGAGTGGGTGATCTCACGTGTGTTTCAGAAGAACACCACCGGCGGCGGCTCCACCGTGTCCGCCGCCGCCGCCGCCACCAGCGGTGGTAGTTCCAAGAAAACAAGAATGACCACATCAAACACTAGCAGCAACATGAGCCTGTGCCCCGAACCGGGTTCACCCTCTTCCATTTACCTTCCGCCGCTTCTGGAATCCTCTCCTTACGCCGCCGCCAGCACCACCACCGCCACCCCCGCCGCGGCAGCATTCAACGATCACGAAAGCTGCTCCTTCAACAGCGCCGTCAGCAACAACAACCAAAGGGAGCACGTGTCCTGTTTCTCCACCATCTCCGCCGCCGCCTTCGACCACCTCGTACCCCCACCGGAGCCGCCGCTTGACCCTTTCGCGCGCTTTCATTGTAACAACAACAACGTTGGTGTTGGAGTCTCTACCTTCCCGTGCCTCAGATCCTTGCACGACAACCTTAACTTGCCCTTCTTTTTCTCTCCAATGGGCCACGTCAGCAGTGCTGATGTGGCATCGTTTGGCGCCGTCACAAACTGGCCGGCGCCAGAAGAGCAGAGGATGGCTGACGGTGGCTCCGGCATGGGGATTGTACCGTCCGAGTTGGATTGCATGTGGGGCTATTGA 1128 0.5372 MDNYYHQHHHPHFDNSNNNEPHLPPGFRFHPTDEELITYYLLKKVLDSSFTGRAIVEVDLNKCEPWELPEKAKMGEKEWYFYSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKNTTGGGSTVSAAAAATSGGSSKKTRMTTSNTSSNMSLCPEPGSPSSIYLPPLLESSPYAAASTTTATPAAAAFNDHESCSFNSAVSNNNQREHVSCFSTISAAAFDHLVPPPEPPLDPFARFHCNNNNVGVGVSTFPCLRSLHDNLNLPFFFSPMGHVSSADVASFGAVTNWPAPEEQRMADGGSGMGIVPSELDCMWGY 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02156 375 Gene3D NAC domain 32 179 IPR036093 GO:0003677|GO:0006355
Gma06g02156 375 SUPERFAMILY NAC domain 16 175 IPR036093 GO:0003677|GO:0006355
Gma06g02156 375 Pfam No apical meristem (NAM) protein 24 150 IPR003441 GO:0003677|GO:0006355
Gma06g02156 375 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 371 - -
Gma06g02156 375 MobiDBLite consensus disorder prediction 1 16 - -
Gma06g02156 375 MobiDBLite consensus disorder prediction 1 27 - -
Gma06g02156 375 ProSiteProfiles NAC domain profile. 23 175 IPR003441 GO:0003677|GO:0006355
Gma06g02156 375 MobiDBLite consensus disorder prediction 181 216 - -
Gma06g02156 375 MobiDBLite consensus disorder prediction 181 217 - -
Gma06g02156 375 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 14 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02156 Gma-Chr6 38720807 38722955 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02156 12 375 NAC Transcription Factor Family AT5G53950 51.662 1.30e-116 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma06g02156 NAM 4.1e-40 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g02156 06 38720807 38722955 Gma06g02156 06 38720807 38722955 ECH
Gma12g01509 12 32826502 32828862 Gma06g02156 06 38720807 38722955 GST