Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02298 ATGGTTTTGTCATGGACAAAAGGGAGAGTGTTCCGGCGTGCCAGAAAGGGGAAAGAGTTGAAAAATTTCGGTGGCGACTTGGAGATAGACATTGCGATCCCCACCCACTTCCGGTGCCCGGTAACATTGGACATGATGAAGGACCCCGTGACCGTTTCCACGGGCATAACCTACGACCGCGACAGCATCGAGAAGTGGATCGAGTCCGGGAACCGCACGTGCCCGGTCACCAAAACGGAGTTGACAACCTTCGACATGATCCCGAACCACGCCATCCGTAGGATGATCCAGGACTGGTGCGTGGAGCACCGTTCCCACGGCATCGAACGGATCCCCACTCCTCGTATCCCCGTCACCCCGTACGAGGTTGCTGACACGTGTACGAGGATCTTGTCGGCGGCGCAACACGGGGACGAGAACAAGTGCGTGGAGTTGGTGAGCAAAATTAAAGCGTGGGGAAGGGAAAGTGAGAGAAATAAGAGATGCATAGTTTCTAACGGTGCTGCTTTAGCACTAGCGAACGCTTTCAACTCTTTCTCATCGCGTGGGTTGTTAATTGAGAAGAACGTGGTTGTGTTGGATGAGATTCTGGGTGCTTTGGTATGGATGCGTCCTCTTTCTGAAGAGGGTAGATCCGTGTTGGGGTCATCGAGTTCTATCTCTTGCATGGTTTGGTTCATGAACGGTAAACAATTATCCACAAGGCAAAACGCTGCTTTGGTTCTTAAGGAAATGCATGTTGAGGCTTTGGTGAAATGTGTAGGAGTTTTTGAGGCTTTGATTAACATGATTAAGGAGCCTGTTGGGAGTGGTTCCACCAAGGCCTGCTTGTCAACGATTTTCAACTTGGTTAATAATAAAAGAGGCGTGACGACATGTCAAAGGTTTGTGGAATTGGGTTTGGTTGATGTGGTGTTGGAGGTTCTTGTTGATGCGGAGAGAGGGGTGTGTGAGAAGGCTTTGGGGGTGTTGGATAGCGTTTGTGATTGCAAGCAAGGGGTGGAGATGGCAAAGGCTAATGCTTTGACTTTGCCTCTTGTGATTAAGAAGCTCTTGAGGGTGTCTGAGTTGTGTTCAAGCTTCGCGGTTTCGGTTCTTTGGAAGATTTGTGACAAGAATATTGAAGAAGGGGTGTTGATTGAGGCGCTTCAAATGGGGGTGTTTCATAAACTACTTGTTTTGTTGCAAGTGGGTTGTGGTGAGGGAACCAAAGAGAAGGCTACGGAGTTGTTGAAGTTGTTGAATAGTTGCAGGAGCAAAGCTGAGTTGATCATACTGTAG 1281 0.4902 MVLSWTKGRVFRRARKGKELKNFGGDLEIDIAIPTHFRCPVTLDMMKDPVTVSTGITYDRDSIEKWIESGNRTCPVTKTELTTFDMIPNHAIRRMIQDWCVEHRSHGIERIPTPRIPVTPYEVADTCTRILSAAQHGDENKCVELVSKIKAWGRESERNKRCIVSNGAALALANAFNSFSSRGLLIEKNVVVLDEILGALVWMRPLSEEGRSVLGSSSSISCMVWFMNGKQLSTRQNAALVLKEMHVEALVKCVGVFEALINMIKEPVGSGSTKACLSTIFNLVNNKRGVTTCQRFVELGLVDVVLEVLVDAERGVCEKALGVLDSVCDCKQGVEMAKANALTLPLVIKKLLRVSELCSSFAVSVLWKICDKNIEEGVLIEALQMGVFHKLLVLLQVGCGEGTKEKATELLKLLNSCRSKAELIIL 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02298 426 PANTHER WDSAM1 PROTEIN 5 423 IPR045185 GO:0061630
Gma02g02298 426 ProSiteProfiles U-box domain profile. 32 106 IPR003613 GO:0004842|GO:0016567
Gma02g02298 426 SMART Ubox_2 36 99 IPR003613 GO:0004842|GO:0016567
Gma02g02298 426 SUPERFAMILY RING/U-box 30 109 - -
Gma02g02298 426 CDD RING-Ubox_PUB 37 78 IPR045210 -
Gma02g02298 426 SUPERFAMILY ARM repeat 128 414 IPR016024 -
Gma02g02298 426 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 423 - -
Gma02g02298 426 Gene3D - 124 424 IPR011989 -
Gma02g02298 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 110 IPR013083 -
Gma02g02298 426 Pfam U-box domain 33 104 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02298 Gma-Chr2 49047249 49048634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02298 28 416 U-box Gene Family AT5G37490 46.734 9.86e-117 346
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g02069 14 51832569 51835573 Gma02g02298 02 49047249 49048634 GST
Gma18g00397 18 3584669 3585964 Gma02g02298 02 49047249 49048634 PCT
Gma11g02173 11 36834075 36835760 Gma02g02298 02 49047249 49048634 PCT
Gma02g02298 02 49047249 49048634 Gma18g00397 18 3584669 3585964 PCT
Gma02g02298 02 49047249 49048634 Gma11g02173 11 36834075 36835760 PCT