Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma02g00764 | ATGTCATCACAAACCGCGCCCACGGAGGCGCCGGAGCCTTATACGCCGCTTCTCCGCTCCCGCACCGATGCCGGCCGAGGTCCCGCCCCCGCGCTGGCGCTCCTTCTCGGCCGCGCCGGCCGCCGTGGCCCATCCATGCTGGTACGTGAGACGGCGGCGCGTGAGCTCGAGGAGCGCCGCGCTGACTGGGGCTACTCCAAGCCGGTGGTGGCGCTCGACATGTCGTGGAACATGGCCTTCGTGGTCGTCTCGGCGGCTATGCTCGCATGCACCACCTCCGAGCACCCGACCACGCCGATCCGCGTGTGGATCGTTGGGTACGCGCTGCAGTGCCTCGTGCACGTGTTGCTCGTGTGGCTCGAGTACCGGCGCCGGAGCCGGAGGGACTCTCGCAGCGGCAGCCAGAGGGCGCGGGACGTGGAGAGCGACGCCGGCAGCGGCGACGATGACGACTACAGTGACGACGGAGATGGGAGCTCTGGCAACACGTCTCGCTCCAGATTCGCAAAACGATGTGAGTCGTTAAATACCGGGGTTTCATTCCTTTGGTGGATAGTGGGCTTTTATTGGGTTGTCTCTGGTGGCGATATACTTCTGCAAGATGCCCCACGATTGTACTGGTTGGCTGTTGTCTTTCTGGCATTTGATGTCTTTTTTGCCATCTTTTGTGTTGTCTTGGCATGCTTGATTGGCATTGCTCTCTGTTGTTGTTTGCCCTGCATCATTGCTATTCTCTATGCTGTTGCAGGACAGGAAGGTGCGTCAGAAGCAGATCTTAGCATGCTTCCGAAATACAAATTTCGAATATTAAGTGATGTGGATAAACCTAGTGGTGGAGCTGGATCAATGGTTCCCATAGAAACCAGCAGTGCTTACTTGGAAAATGAACGAACACTTCTACTCGAGGATGCGGAATGTTGTATATGCCTCTGTTCATACGAGGATGGAGCAGAGCTGCATGCTCTTCCCTGCAACCATCATTTCCATTCGTCGTGCATTGTGAAATGGCTGAAGATGAATGCAACTTGTCCTCTCTGCAAGTACAATATTCTCAAGGGAAACGAACAAGTGTGA | 1074 | 0.5615 | MSSQTAPTEAPEPYTPLLRSRTDAGRGPAPALALLLGRAGRRGPSMLVRETAARELEERRADWGYSKPVVALDMSWNMAFVVVSAAMLACTTSEHPTTPIRVWIVGYALQCLVHVLLVWLEYRRRSRRDSRSGSQRARDVESDAGSGDDDDYSDDGDGSSGNTSRSRFAKRCESLNTGVSFLWWIVGFYWVVSGGDILLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSMLPKYKFRILSDVDKPSGGAGSMVPIETSSAYLENERTLLLEDAECCICLCSYEDGAELHALPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNEQV | 357 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma02g00764 | 357 | ProSiteProfiles | Zinc finger RING-type profile. | 306 | 347 | IPR001841 | - | |
| Gma02g00764 | 357 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 9 | 357 | - | - | |
| Gma02g00764 | 357 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Gma02g00764 | 357 | CDD | RING-H2_PA-TM-RING | 305 | 347 | - | - | |
| Gma02g00764 | 357 | Pfam | Ring finger domain | 305 | 347 | IPR001841 | - | |
| Gma02g00764 | 357 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 250 | 352 | IPR013083 | - | |
| Gma02g00764 | 357 | PANTHER | TARGET OF ERK KINASE MPK-1 | 9 | 357 | - | - | |
| Gma02g00764 | 357 | SUPERFAMILY | RING/U-box | 296 | 351 | - | - | |
| Gma02g00764 | 357 | MobiDBLite | consensus disorder prediction | 133 | 165 | - | - | |
| Gma02g00764 | 357 | SMART | ring_2 | 306 | 346 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma02g00764 | Gma-Chr2 | 7464833 | 7469990 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma02g00764 | 1 | 356 | C3H Transcription Factor Family | AT1G68070 | 66.947 | 8.48e-170 | 475 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gma02g00764 | 02 | 7464833 | 7469990 | Gma02g00764 | 02 | 7464833 | 7469990 | ECH | |
| Gma07g01618 | 07 | 32816068 | 32829862 | Gma02g00764 | 02 | 7464833 | 7469990 | GST |