Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0855 ATGGTTTTGTCTTGGACAAGAGGGAGGGTTTTCCGCCGCGCACGCAAAGACAAAGATCTTCATGTTAACGATCTGGAGGTTGAGGTTGCTGTCCCTTCCCACTTCCGGTGCCCGGTCACCCTCGACCTCATGAAGGACCCCGTGACAGTGTCCACAGGGATAACCTACGACCGAGACAGCATCGAAAAGTGGCTAGAAGAAGGGAACAACACGTGCCCGGTATCAAAAAGGGAGCTAACAACCTTCGACATGATCCCAAACCACGCCATCCGGAGAATGATTCAAGATTGGTGCGTCGAGCACCGTTCTTTCGGGATCGAGAGGATCCCTACTCCTCGTATTCCCGTAACACCATACCAGGTTTCGGACACGTGTTCGAAGATCATGAGTGCTTCGCGAGACGGGGATGAAACTAAGTGCAAGGATATGGTGAGAAAGATCAAGGGTTGGGGGAAAGAGAGTGAGAGGAACAGGAGGTGCGTGGTGGCTAACGGTGCTCCTCTTGCTTTGGTCAGCGCCTTTGACTCTTTCTCATCGAAAGGTTTCGTCGATGAGGGGAATGCTGGTGTCTTGGAGGAGATCTTGGGGGTGATGACGTGGATGCGCCCTATTGGTGAAGAGGGCAAGTCCTTGTTGGTGTCATCGAAGGGTTCAATGAGTTGCATGGTTTGGTTCTTGTTGAATGGTAAGGACCTTTCATCAAGGCAAAGTGTTGCTCTGTTGCTCAGGGAGATGCCAATTGAGGCTTTGGAGAAGACTCAAGGTGTTGTTGAAGGTTTGGTCAACATGATTAAGGAGCCTATTGGGAGTGCTTCTACTACGAAAGCATGTTTGTCAACGGTTTTTCAATTGGCTAACTTTTCAAAGAATAAAGAGGTGGTTTCACAAAGATTTGTGGAATTGGGTTTGGTTGAGGCTTTGTTGGAGACACTTGTTGATGCTGAAAAGGGGGTTTGTGAGAAGGCTTTAGGGGTGTTGGATTCAATTTGTGGTTGCAAACAAGGGAAAGAAGTGGCAAAGGCTAATGCTCTTACATTGCCTCTTGTGATCAAGAAGCTCTTGAGGGTGTCTGAGTTGAGCACTAGCTTTGCTGTCTCTATTGTCTGGAAGATTTGTGACAAGACTGAAGAAGGGGCATTGGTTGAGGCACTTCAAGTTGGGGTTTTTCAGAAGCTACTTGTTCTGTTGCAAGTTGGGTGTGCTGAGAGCACAAAAGAAAAAGCTACCGAGTTGTTGAAGTTGTTGAATGGTTATAGGAGCAAGGCTGAGTGTGTTGATTCGTCTTTGGATCTCCAGCACCTGAAGAAGCCTTTCTAA 1317 0.4799 MVLSWTRGRVFRRARKDKDLHVNDLEVEVAVPSHFRCPVTLDLMKDPVTVSTGITYDRDSIEKWLEEGNNTCPVSKRELTTFDMIPNHAIRRMIQDWCVEHRSFGIERIPTPRIPVTPYQVSDTCSKIMSASRDGDETKCKDMVRKIKGWGKESERNRRCVVANGAPLALVSAFDSFSSKGFVDEGNAGVLEEILGVMTWMRPIGEEGKSLLVSSKGSMSCMVWFLLNGKDLSSRQSVALLLREMPIEALEKTQGVVEGLVNMIKEPIGSASTTKACLSTVFQLANFSKNKEVVSQRFVELGLVEALLETLVDAEKGVCEKALGVLDSICGCKQGKEVAKANALTLPLVIKKLLRVSELSTSFAVSIVWKICDKTEEGALVEALQVGVFQKLLVLLQVGCAESTKEKATELLKLLNGYRSKAECVDSSLDLQHLKKPF* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0855 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 106 IPR013083 -
Dod08g0855 438 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Dod08g0855 438 SUPERFAMILY ARM repeat 133 402 IPR016024 -
Dod08g0855 438 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
Dod08g0855 438 Gene3D - 122 433 IPR011989 -
Dod08g0855 438 SUPERFAMILY RING/U-box 27 106 - -
Dod08g0855 438 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Dod08g0855 438 CDD RING-Ubox_PUB 35 76 IPR045210 -
Dod08g0855 438 PANTHER WDSAM1 PROTEIN 8 438 IPR045185 GO:0061630
Dod08g0855 438 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0855 Dod-Chr8 10328067 10330303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0855 26 438 U-box Gene Family AT5G37490 46.209 1.72e-118 351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0202 04 2506303 2508130 Dod08g0855 08 10328067 10330303 PCT