Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3136 ATGGGTCCTGGGTTCAAGACGCAGAGCCACAGCCACCACCCTGTGGTTTCGAGGATGCATGAGCAAGCAGGGAGCCAAAAAATGAAGAACACTTTCATTCAGGCCCATAGGGCTTGGCTTCCAAAGCTTCTGCTGCTATGGATCCTGCTCATGGCTATCATTGGTTGGTTCATCTACTCTCGTATGGATGCTGACACCAAAGTCAGGAGGAAGGAGGTGCTGGGAAGCCTTTGTGATCAAAGGGCAAGAATGCTGCAAGATCAATTCAGTGTCAGTGTCAACCATGTCCATGCCCTTGCCATCCTTGTTTCAACCTTCCATTACTACAGAAACCCTTCTGCCATTGACCAGGAAACCTTTGCAGAATATACAGCTAGGACTGCATTTGAAAGGCCATTGCTGAGTGGGGTGGCTTATGCTCAAAGAGTGGTTAACTCGGAGAGGGAAAAGTTTGAGAAGCAACATGGATGGATAATAAAGACAATGGAAAGAGAGCCCTCACAGGTTAGAGATGAGTATGCACCCGTGATATTTGCACAGGAAACCGTTTCTTACCTTGAATCTCTTGATATGATGTCTGGGGAGGAGGACCGAGAAAATATTTTGAGGGCCAGGGCCACTGGGAAAGCCGTTCTGACTAGCCCCTTCAGGCTGTTGGGTTCTCATCATCTTGGTGTGGTCTTAACATTTCCTGTTTACAAATCTAAGCTCCCTCCAAAGCCTACAATGCAAGAGCGCATTAAAGCAACAGCAGGATATGTTGGTGGATCCTTTGATGTTGAGTCCCTTGTGGAGAATTTACTTGGTCAACTTGCTGGTAACCAAGCAATTTTGGTGAATGTATATGATGTCACAAACTCTTCTACTGCGCTAGTTATGTATGGGAACCAATATGAAGAAGGTGATATGTCACTCGTTCATGAAAGTAAGCTTGATTTTGGAGATCCATACAGGAAACATCAGATGATATGTAGGTATCATCAGAAGGCACCAACAAATTGGATAGCACTTACCACAGCATTCCTATTCTTTGTGATTCTCTTATTACTGGGTTACATTTTGTATGGTGCTGGAAATCATATTGTCAAAGTAGAAGATGATTTCCATGAAATGGAGAAGTTAAAAGGTCGGGCAGAAGCCGCTGATATTGCCAAGTCACAGTTTCTAGCTACTGTCTCCCATGAAATTAGAACACCCATGAATGGCATTTTAGGAATGCTTGGTCTGCTTCTAGATACTGAGTTGAGTTCAACCCAAAGAGATTATGCTCAGACTGCTCAAGCATGTGGGAAAGCTCTGATAACATTAATAAATGAGGTGCTTGACCGAGCTAAAATTGAAGCTGGCAAATTAGAGCTGGAAGCAGTTCCATTTGACCTTCGTTCCATACTTGATGATGTCCTTTCGCTTTTCTCTGAGAAGTCTAGACATAAAGGTTTAGAGCTGGCAGTGTTTGTTTCCGATAAAGTTCCAGATATTGTTATGGGAGATCCTGGGAGATTCAGACAAATAATAACCAATCTTGTTGGCAACTCTGTTAAATTCACTGAACGAGGGCATATATTCGTTAAAGTCCATCTAGCGGAAAATAGAAAGCCCACAATGAATGGAAAATCTGAGACTTTTCTAAATGGAGGATCAGATGAAGTTGGGCACATATCTGCCGGTCATCATTTCAAAACCCTCAGTGGATGTGAAGCAGTTGATGAACAGAACAGCTGGGATAATTTTAAGCATCTAATTGCCGATGAAGAATTTTTATTTGATGCTTCAGTTCAGAAGGTGGCCTCCAGTGAATCTTATGAGCAAGTTACCTTGATGGTCTGTGTGGAGGACACTGGAATTGGAATTCCTGACTCAGCCAAGGATAGGATTTTCATGCCTTTTGTGCAGGCAGATAGCTCAACCTCTCGAAACTACGGTGGTACGGGTATTGGATTGAGTATTAGTAAGTGCCTGGTTGAACTAATGGGTGGTAAGATAAACTTCAGAAGCCGAGAGCAGGTTGGGAGCACATTTTCATTTACTGCAAACTTTGGAACATTTAAGAAAAATTTGATAACTGACGTGAAGAAACTAAATTGGGAAGAATTGCCTTCTAATTTTAGAGGGCTTAAGGCCATTGTGATTGATGGAAAACCTGTTAGAGCTGCTGTGACTAGATACCATTTGAAGAGACTAGGCATACAGGCTACAGTTGCAAATAGCATTAACAATGCTGTTTCTTTATGTGGGAAAAATGGTTCTTTGACCTCAGGATTATTTCAACCTGATATTGTTTTCATTGAGAAGGATTCATGGTTTTCCGGAGAGGATGGGATCTTCAGTGTCTGGAAACAGAATGGGCATACGATTAAGATGCCACAAATGATCCTTCTTGCGACCAATATTAGCAATGCTGAATTTGATAAAGCTAAAGCCTCAGGTTTCAGTGACACAGTGATCATGAAGCCTCTGAGAGCTAGTATGGTGGCTGCTTGTCTTCAGCAAGTTCTGGGGATGGGAAAGAAGAGGCAACTAGGGAAAGACATGCCTAATGGTTCCACTTCTCTAAGAAGCATTCTTTGTGGAAAGAAAATCTTAGTAGTTGATGACAATATGGTAAACCGGAGGGTTGCGGCAGGTGCATTAAAAAAGTTTGGTGCTGATGTTAATTGTGCGGAAAGCGGCAAAGTTGCTCTTGCAATGCTTCAATTGCCTCACAATTTTGATGCTTGCTTCATGGATATTCAAATGCCAGAAATGGATGGGTTTGAAGCAACTCGGCAAATTCGGGCGATGGAGAGTGAGGCAAATAAGCAGATGAATGGTGAATCTGGTGAAGGAAACACCCGGAAAAATGAGTTCCACATACCTATATTGGCCATGACAGCTGATGTAATCCATGCTACGTACGATAAGTGCTTGAAATGTGGGATGGACGGGTATGTCTCAAAGCCCTTTGAGGAAGAGAACCTCTATGAAGCAGTAGCAAAGTTTTTCAAGTCCAAGCCTATCTCAGACTCATGA 3009 0.4274 MGPGFKTQSHSHHPVVSRMHEQAGSQKMKNTFIQAHRAWLPKLLLLWILLMAIIGWFIYSRMDADTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSEREKFEKQHGWIIKTMEREPSQVRDEYAPVIFAQETVSYLESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPKPTMQERIKATAGYVGGSFDVESLVENLLGQLAGNQAILVNVYDVTNSSTALVMYGNQYEEGDMSLVHESKLDFGDPYRKHQMICRYHQKAPTNWIALTTAFLFFVILLLLGYILYGAGNHIVKVEDDFHEMEKLKGRAEAADIAKSQFLATVSHEIRTPMNGILGMLGLLLDTELSSTQRDYAQTAQACGKALITLINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAENRKPTMNGKSETFLNGGSDEVGHISAGHHFKTLSGCEAVDEQNSWDNFKHLIADEEFLFDASVQKVASSESYEQVTLMVCVEDTGIGIPDSAKDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGKINFRSREQVGSTFSFTANFGTFKKNLITDVKKLNWEELPSNFRGLKAIVIDGKPVRAAVTRYHLKRLGIQATVANSINNAVSLCGKNGSLTSGLFQPDIVFIEKDSWFSGEDGIFSVWKQNGHTIKMPQMILLATNISNAEFDKAKASGFSDTVIMKPLRASMVAACLQQVLGMGKKRQLGKDMPNGSTSLRSILCGKKILVVDDNMVNRRVAAGALKKFGADVNCAESGKVALAMLQLPHNFDACFMDIQMPEMDGFEATRQIRAMESEANKQMNGESGEGNTRKNEFHIPILAMTADVIHATYDKCLKCGMDGYVSKPFEEENLYEAVAKFFKSKPISDS* 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3136 1002 SMART REC_2 858 990 IPR001789 GO:0000160
Dod04g3136 1002 PANTHER HISTIDINE KINASE 4 25 998 - -
Dod04g3136 1002 SUPERFAMILY CheY-like 857 994 IPR011006 -
Dod04g3136 1002 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 370 450 IPR036097 GO:0000155|GO:0007165
Dod04g3136 1002 SMART HKATPase_4 496 681 IPR003594 -
Dod04g3136 1002 ProSiteProfiles CHASE domain profile. 111 323 IPR006189 -
Dod04g3136 1002 ProSiteProfiles Histidine kinase domain profile. 391 681 IPR005467 -
Dod04g3136 1002 CDD HATPase_EvgS-ArcB-TorS-like 501 679 - -
Dod04g3136 1002 Gene3D - 358 447 - -
Dod04g3136 1002 SMART HisKA_10 384 449 IPR003661 GO:0000155|GO:0007165
Dod04g3136 1002 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 496 678 IPR003594 -
Dod04g3136 1002 Pfam Response regulator receiver domain 860 990 IPR001789 GO:0000160
Dod04g3136 1002 PRINTS Bacterial sensor protein C-terminal signature 665 678 IPR004358 GO:0016310|GO:0016772
Dod04g3136 1002 PRINTS Bacterial sensor protein C-terminal signature 641 659 IPR004358 GO:0016310|GO:0016772
Dod04g3136 1002 PRINTS Bacterial sensor protein C-terminal signature 624 634 IPR004358 GO:0016310|GO:0016772
Dod04g3136 1002 PRINTS Bacterial sensor protein C-terminal signature 606 620 IPR004358 GO:0016310|GO:0016772
Dod04g3136 1002 Gene3D - 853 1000 - -
Dod04g3136 1002 Gene3D - 699 836 - -
Dod04g3136 1002 Gene3D - 448 683 IPR036890 -
Dod04g3136 1002 CDD HisKA 384 445 IPR003661 GO:0000155|GO:0007165
Dod04g3136 1002 Gene3D - 62 114 - -
Dod04g3136 1002 MobiDBLite consensus disorder prediction 1 20 - -
Dod04g3136 1002 SMART CHASE_2 111 296 IPR006189 -
Dod04g3136 1002 Pfam His Kinase A (phospho-acceptor) domain 384 449 IPR003661 GO:0000155|GO:0007165
Dod04g3136 1002 CDD REC_hyHK_CKI1_RcsC-like 860 990 - -
Dod04g3136 1002 PANTHER TWO-COMPONENT HISTIDINE KINASE 25 998 - -
Dod04g3136 1002 ProSiteProfiles Response regulatory domain profile. 706 832 IPR001789 GO:0000160
Dod04g3136 1002 SUPERFAMILY CheY-like 701 833 IPR011006 -
Dod04g3136 1002 Gene3D CHASE domain 115 330 IPR042240 -
Dod04g3136 1002 ProSiteProfiles Response regulatory domain profile. 859 994 IPR001789 GO:0000160
Dod04g3136 1002 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 438 676 IPR036890 -
Dod04g3136 1002 Pfam CHASE domain 114 294 IPR006189 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3136 Dod-Chr4 55032705 55040812 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g3136 13 1002 Histidine Kinase Gene Family AT2G01830 69.673 0.0 1382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dod04g3136 HATPase_c 5.2e-31 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g3136 04 55032705 55040812 Dod04g3136 04 55032705 55040812 ECH