Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3114 ATGGCGATGGCGAAGGGGAAAGAGGAAGATGAAGAGGAGGAGGAGGTTAAGAATCATCAGAACAGTGGGAAGAGGATGAAATGCATGAGGAACGAAAAAGCGGAAGCAGCAGAAGAGGAAACAGAGCTTCCACTGAGGCCAGGGATGTTCTTCTACCCAACAACCCCAACCTCCTTTGTTGTCTCAGATGCCCTTGAGCCCGATTTCCCCATCATCTATGTCAACAAGGTCTTTGAAATCTTCACTGGCTATCGTGCTGATGAAGCCCTCGGTCGCAACTGTCGGTTCTTGCAGTACAGGGATCCTCGAGCTCAGAGGCGGCACCCATTGGTGGATCCCGTTGTTGTGTCTGAGATTAGAAGATGTCTCGAGGACGGTATTGAGTTCCAAGGTGAACTTCTGAATTTCAGGAAGGATGGTACTCCTTTAGTGAACAGACTCAGACTTGCACCAATTCATGATGATGATGGAACTGTGACACACGTAATAGGTATCCAACTATTTTCTGAAGCAAATATAGATCTGAACCACGTCTCATATCCAGTTTTCAAAGAGAATTGCAATCAAGACTTTGATAAGAATGGTAAATTTTCTCCCAAGAGTGGACAATCACTGTACAGTCAGCACCAAGAGATGTGTGGTATTCTTCAGCTTTCTGATGAAGTCTTGGCTCACAACATTTTGTCGCGCTTGACACCAAGGGATGTTGCATCCATTGGGTCCGTATGCAGGAGGATCCGCCAATTGACAAAGAACGAGCATGTTAGGAAGATGGTGTGTCAGAATGCGTGGGGCAAAGAAGTGACAGGTACATTGGAATTGATGACCAAGAAGTTAGGATGGGGTCGTCTCACTCGGGAACTCACTACTCTTGAGGCTGTTTGTTGGAGAAAACTGACAGTTGGAGGTGCAGTGGAGCCTTCACGCTGCAATTTCAGTGCTTGTGCTGCAGGAAATCGCCTTGTATTGTTTGGAGGTGAAGGAGTTGATATGCAACCTATGGATGACACTTTTGTTCTAAATCTCGATGCTAAAAATCCAGAGTGGCGCAGGGTTAGTGTGAAATCATCCCCACCTGGAAGGTGGGGCCACACACTCTCATGCTTAAATGGTTCTTGGTTGGTGGTTTTTGGTGGGTGTGGTAGGCAAGGTTTGCTGAATGATGTGTTTGTACTTGATTTGGATGCTCAGCAGCCAACATGGAGGGAAGTCTGTGGTGGAACGCCACCACTTCCTAGATCTTGGCACAGCTCTTGCACGATTGAAGGGTCCAAATTGGTTGTCTCTGGTGGGTGCACAGATGCTGGGGTACTTCTTAGTGACACATATTTACTGGACCTCACAACTGGTAATCCAACATGGAGAGAAATTCCAACATCATGGGCTCCTCCTCCTCGGTTGGGGCACTCACTCTCAGTCTATGGGAGAACAAAAATTCTCATGTTTGGTGGACTTGCCAAGAGTGGACACTTGCGTTTACGATCGGGTGAGGCTTATACGATTGATTTAGAAGATGAACAACCACAATGGAGGCAACTAGAATGTAGTGCATTCACTGGATTAGCCAGTCAAAGTGCTGTGGTTCCTCCTCCTCGACTAGACCATGTTGCTGTCAGCATGCCATGTGGAAGGATCATCATTTTTGGAGGTTCCATTGCAGGTCTTCACTCACCATCTCAGCTATTTCTCTTGGACCCGTCTGACGAGAAACCATCATGGAGGATCCTCAATGTTCCGGGGCAACCACCTAAATTTGCATGGGGTCATAGCACGTGTGTGGTTGGAGGGACAAGGGTTTTGGTGTTGGGTGGACACACTGGGGAAGAATGGATACTAAATGAGTTGCACGAGTTATGCTTGGCAAGCAGACAGGACAATGACCTGTGA 1887 0.4738 MAMAKGKEEDEEEEEVKNHQNSGKRMKCMRNEKAEAAEEETELPLRPGMFFYPTTPTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEALGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEDGIEFQGELLNFRKDGTPLVNRLRLAPIHDDDGTVTHVIGIQLFSEANIDLNHVSYPVFKENCNQDFDKNGKFSPKSGQSLYSQHQEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLTRELTTLEAVCWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWREVCGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTTGNPTWREIPTSWAPPPRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDEQPQWRQLECSAFTGLASQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSDEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDNDL* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3114 628 SMART pac_2 130 171 IPR001610 -
Dod04g3114 628 SUPERFAMILY Galactose oxidase, central domain 296 613 IPR011043 -
Dod04g3114 628 PANTHER ADAGIO PROTEIN 3 15 625 - -
Dod04g3114 628 SUPERFAMILY F-box domain 209 283 IPR036047 GO:0005515
Dod04g3114 628 Pfam Kelch motif 533 580 IPR011498 GO:0005515
Dod04g3114 628 Pfam F-box domain 215 252 IPR001810 GO:0005515
Dod04g3114 628 CDD PAS 55 165 IPR000014 -
Dod04g3114 628 ProSiteProfiles PAS repeat profile. 71 126 IPR000014 -
Dod04g3114 628 SUPERFAMILY PYP-like sensor domain (PAS domain) 66 166 IPR035965 -
Dod04g3114 628 Gene3D - 287 490 IPR015915 GO:0005515
Dod04g3114 628 Pfam PAS domain 65 165 IPR000014 -
Dod04g3114 628 Gene3D - 208 259 - -
Dod04g3114 628 MobiDBLite consensus disorder prediction 1 41 - -
Dod04g3114 628 Gene3D PAS domain 52 177 - -
Dod04g3114 628 Pfam Galactose oxidase, central domain 374 421 - -
Dod04g3114 628 Pfam Galactose oxidase, central domain 423 474 - -
Dod04g3114 628 Pfam Galactose oxidase, central domain 309 359 - -
Dod04g3114 628 Gene3D - 491 622 IPR015915 GO:0005515
Dod04g3114 628 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 15 625 - -
Dod04g3114 628 TIGRFAM sensory_box: PAS domain S-box protein 70 165 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3114 Dod-Chr4 54808915 54812293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g3114 54 167 AGC Kinase Gene Family AT5G58140 43.860 9.13e-22 98.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g3114 04 54808915 54812293 Dod04g3114 04 54808915 54812293 ECH