Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3108 ATGTCGTGGGAGGACGAGATTGTGATGCGTGATGTCACAAATGCGGGCCTCGTTGTCAGTGATCGCATTGGTCGCGAAGTCTCCTCTCAGCTCGACCTCGAAGAAGCTCTTGAGGCTTCCAGATATGCTAGCCACCCTTACTCCGCTCACCCTAGAGAGTGGCCACCCTTGGTTGAGGTGGCCAACACCTGGGAGTTGCCTCCTGTTCTCATTGAAAGATACAATGCAGCTGGTGGGGAGGGGACTGCTTTTTGTGGAATATTTCCTGAAATACGGAGGGCATGGGCGTCTGTCGACAATTCATTGTTCCTTTGGCGTTTTGATAAGTGGGATGGCCAATGTCCTGAATATAGTGGGGAGGAACAAGCTATTTGTGCTGTTGGTCTTGCGAGATCAAAAGCTGGTGTTTTTGTTGAAGCTATCCAATATCTTTTAATTTTAGCGACGCCTGTCGAGTTGGTTTTAGTAGGAGTGTGCTGCTCTGGAGGAGCAGATGGATCAGATCCGTTTGCAGAGGTAACATTACAGCCATTGCCAGAGTATACAGTACCATCTGATGGGGTTACAATGACTTGTGTGACATGTACTGATAAGGGACGCATATTCCTTGCTGGTCGTGACAGTCACATATATGAGCTTCTTTATTCAACTGGTTCAGGATGGCAAAAACGCTGCAGAAAAATCTGCCTCACTGCTGGTTTAGGAAGTGTAATTTCAAGATGGGTTATACCAAATGTATTCAATTTTGGAGCAGTTGACCCCATTGTTGAAATGGTTTTTGACAATGAGAGGCAATTATTGTATGCACGAACAGAAGATATGAAGCTTCAGGTTTATGTTCTCGGACCAAATGGTGATGGCCCATTAAAGAAAGTTGCTGAAGAAAAGAATCTTGTTAATCAGAGGGATGGACATTATGGAGGTAGACAATCAACAGGATCAAGGGTCTCAAATCGATCACCAAAGCCGTCTATTGTTTGTATTTCACCGTTATCTACACTTGAATCAAAGTGGCTACATCTTGTTGCTGTTTTATCAGATGGCAGAAGAATGTACCTGTCTACCTCTCCTTCTAGTGGAAATTTGACTGGGTTCAACAGTAACCATCACAAGCCTAGCTGTTTAAAGGTTGTCACAACAAGGCCCGCTCCTCCTTGGGGTGTTAGTGGTGGTCTCACATTTGGAGCCATGGCTCTTGCGGGTAGACCTCAGAATGAGGATCTCTCACTGAAAGTTGAGGCAGCCTATTATTCTACAGGAACTCTTATCCTTTCTGATGCATCACCTTCTTCTATGCCATCTCTTCTTGTTCTGAACAGGGATTCAAGCACCCAATCGTTGCCATCAGGTAGTCTCGGGACAAGTTCTAGGAGTTCCCGTGCATTACGAGAATCTGTATCTTCTTTACCAGTTGAAGGGCGAATGCTTTCTGTGGCAGATGTTTTACCTTTGCCAGATACTGCAGCTGCTGTTCAGTCTTTATATTCAGAAATTGAGTTTGGTGGTTATGAGAGCTCAATGGAATCATGTGAAAGGGCATCTGGCAAACTATGGGCTAGGGGAGACCTCTCAACCCAACATATATTGCCAAGGAGGAGAATTGTTATCTTCAGCACAATGGGCATGATGGAGATTGTTTTTAATCGGCCATTGGACATTTTAAGGAGGTTATTAGAGTCCAACTCTCCTAGATCCGTTTTAGAAGATTTCTTCAATCGTTTTGGTGCTGGTGAGGCAGCTGCTATGTGTCTAATGCTGGCTGCCAGGATTGTACATTCGGAAAACCTTATTAGCAATGTTATTGCTGAGAAGGCAGCTGAAGCTTTTGAGGACCCAAGAGTTGTTGGAATGCCCCAACTTGAAGGCAGTAGTGCATTATCAAACACAAGAACTGCTGCTGGTGGATTTAGCATGGGCCAGGTTGTTCAGGAGGCTGAGCCTGTGTTTTCGGGTGCACATGAAGGGCTCTGTCTGTGTTCATCTAGATTGCTTTTTCCTCTATGGGAACTTCCTGTAATGGTTGTAAAAGGTCGTTTAGGTCCTTCAGGTGCTTTATCTGATAGTGGGGTCATTGTATGCAGACTTTCTGTCGGTGCTATGCAAGTCCTTGAACACAAAATCCGATCTTTAGAAAAATTCTTAAGATCCAGACGGAACCAAAGGAGGGGACTTTATGGCTGTGTTGCAGGTTTAGGAGATGTAAGTGGTTCTATTCTATATGGTAGCAGTTCAGCATTAGGTGCTGGTGATCGAAGTATGGTAAGAAACTTGTTTGGTGCGTATTCAAGACATATGGAGTCCAATGGTGGTGGAACATCTAACAAAAGGCAAAGGTTGCCATATAGTCCTGCAGAATTAGCTGCCATGGAGGTGAGGGCAATGGAATGTATTAGGCAGCTGCTTCTTAGATCCGGTGAAGCTCTGTTTCTGCTTCAACTTCTTTCACAGCATCATCTCACTCGCTTGATTCAGGGATTTGATGCTAACCTTCAACAGGCATTTGTTCAGTTAACATTTCACCAATTAGTTTGTTCTGAGGAGGGTGACCGTCTTGCTACAAGACTTATATCTGCTCTAATGGAGTATTATACTGGTCCTGATGGCAGGGGGACTGTAGATGATATTAGCAGGAGATTAAGAGAGGGTTGTCCAAGCTACTATAAGGAGTCTGATTACCAGTTCTTCTTAGCTGTGGAAGCTCTGGAGAGAGCTGCTGTGACTATAGATGATGAGGAGAAGGAGAATCTTGCAAGAGAAGCATTGAATTCCTTAAGCAAAGTTCCAGAGTCTGCAGACTTGCGAACTGTTTGCAAACGTTTTGAGGATTTAAGATTTTATGAAGCTGTAGTGCGCTTACCTCTTCAAAAGGCACAGGCTCTTGATCCTGCTGGTGATGCTTATAATGATGAAATTGATGCAACTGTCAGAGAACAGGCACTTGCTCAGCGCGAACAGTGTTATGAGATAGTTATTAGCGCTTTGCGATCTCTGAAAGGTGACACCTCACAGAAGGAATTTGGCTCTCCGATCAGACCTGCTGCTTCACAATCCACTCTTGATCCAGCCTCTCGGAAAAAATATATATCGCAAATTGTTCAACTTGGTGTCCAATCTCCTGACAGAATTTTCCATGAGTATCTATACCAGGCTATGATTGATTTAGGTCTTGAGAATGAGTTGCTAGAGTATGGAGGTCCTGATCTGTTGCCCTTTTTGCAAAGCGCGGGTCGTAAACCCATACAAGAGGTCCGTGCTGTGACTGCAACTACTTCTCCAATGGGGCAATCGGGAGCACCTATGTCGTCTAATCAAGTCAAGTACTATGAACTTTTGGCACGGTATTATGTCATGAAGCGGCAACATATGCTTGCGGCTCATGCATTGCTAAGATTAGCTGAAAGACGCTCTATTGATGGAGTTCCTACTCTTGAACAGAGGTGTCAGTACCTAAGTAATGCAGTTCTGCAGGCAAAAAATGCAACTAATAGTGATGGGTTGGTAGGTTCTGCTCGGAGTTCCATTGATAGTGGATTCCTAGACTTGCTTGAAGGGAAGCTGGCTGTTCTTCGATTTCAAATAAAAATCAAAGAGGAATTGGAGGCAATGGCTTCCAGGTCTGAGGTTTTACCAAGCACATCTGATTCCGTGCAAAATGGTTCAGTCCCTGAGGGCAGCTCAACTGCTGATGCTAATTTTGCAAATGTAGCAAGAGAGAAGGCCAAGGAGCTATCGTTGGAAGTAAAGAGCATAACACAATTATATAACGAATTTGCAGTTCCCTTTGAGCTCTGGGAGATATGCCTGGAGATGCTGTACTTTGCCAATTATTCTGGTGATGCTGACAGTAGCATTGTAAGAGAGACATGGGCTAGACTTATGGATCAAGCTATTTCAAGAGGTGGCATTGCTGAAGCTTGCTCAGTATTAAAGAGGGTTGGCCCCCGAATTTATCCCGGTGATGGAGCTGTTTTACCGTTTGACACTATTTGTCTTCACCTAGAGAAGGCTGGACTGGAGAGGTTAAATTCAGGTGTTGAATCCGTTGGAGATGAAGATGTTGCAAGAGCCCTTCTCTCTGCGTGCAAGGGTGCTGCTGAACCTGTATTGAATACATATGATCCATTGTTGTCAAACGGGGCTATTTTGCCATCCCCAAATCTTAGATTACGACTGCTGAGATCAGTCCTTGTAGTACTTCGTGAGTGGGCCATTTCTGTATATTCCCAGAGGATTGGTACCAGTGTCTCTGGGTCTTCCCTAATACTAGGTGGAGGATTTCCATTGGAACGAACAGTTGTTAGCCAAGGAGTTCGTGATAAGATCACAAGTGCGGCAAACAGGTATATGACTGAGGTACGGAGGTTAGCCCTTCCACAGAGTCAAACAGAAATAGTCTACCGAGGCTTCAGAGAACTTGAAGAGTCGCTTATGAGTCCTCATTCATTTGATCGATATTGA 4458 0.4453 MSWEDEIVMRDVTNAGLVVSDRIGREVSSQLDLEEALEASRYASHPYSAHPREWPPLVEVANTWELPPVLIERYNAAGGEGTAFCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYSGEEQAICAVGLARSKAGVFVEAIQYLLILATPVELVLVGVCCSGGADGSDPFAEVTLQPLPEYTVPSDGVTMTCVTCTDKGRIFLAGRDSHIYELLYSTGSGWQKRCRKICLTAGLGSVISRWVIPNVFNFGAVDPIVEMVFDNERQLLYARTEDMKLQVYVLGPNGDGPLKKVAEEKNLVNQRDGHYGGRQSTGSRVSNRSPKPSIVCISPLSTLESKWLHLVAVLSDGRRMYLSTSPSSGNLTGFNSNHHKPSCLKVVTTRPAPPWGVSGGLTFGAMALAGRPQNEDLSLKVEAAYYSTGTLILSDASPSSMPSLLVLNRDSSTQSLPSGSLGTSSRSSRALRESVSSLPVEGRMLSVADVLPLPDTAAAVQSLYSEIEFGGYESSMESCERASGKLWARGDLSTQHILPRRRIVIFSTMGMMEIVFNRPLDILRRLLESNSPRSVLEDFFNRFGAGEAAAMCLMLAARIVHSENLISNVIAEKAAEAFEDPRVVGMPQLEGSSALSNTRTAAGGFSMGQVVQEAEPVFSGAHEGLCLCSSRLLFPLWELPVMVVKGRLGPSGALSDSGVIVCRLSVGAMQVLEHKIRSLEKFLRSRRNQRRGLYGCVAGLGDVSGSILYGSSSALGAGDRSMVRNLFGAYSRHMESNGGGTSNKRQRLPYSPAELAAMEVRAMECIRQLLLRSGEALFLLQLLSQHHLTRLIQGFDANLQQAFVQLTFHQLVCSEEGDRLATRLISALMEYYTGPDGRGTVDDISRRLREGCPSYYKESDYQFFLAVEALERAAVTIDDEEKENLAREALNSLSKVPESADLRTVCKRFEDLRFYEAVVRLPLQKAQALDPAGDAYNDEIDATVREQALAQREQCYEIVISALRSLKGDTSQKEFGSPIRPAASQSTLDPASRKKYISQIVQLGVQSPDRIFHEYLYQAMIDLGLENELLEYGGPDLLPFLQSAGRKPIQEVRAVTATTSPMGQSGAPMSSNQVKYYELLARYYVMKRQHMLAAHALLRLAERRSIDGVPTLEQRCQYLSNAVLQAKNATNSDGLVGSARSSIDSGFLDLLEGKLAVLRFQIKIKEELEAMASRSEVLPSTSDSVQNGSVPEGSSTADANFANVAREKAKELSLEVKSITQLYNEFAVPFELWEICLEMLYFANYSGDADSSIVRETWARLMDQAISRGGIAEACSVLKRVGPRIYPGDGAVLPFDTICLHLEKAGLERLNSGVESVGDEDVARALLSACKGAAEPVLNTYDPLLSNGAILPSPNLRLRLLRSVLVVLREWAISVYSQRIGTSVSGSSLILGGGFPLERTVVSQGVRDKITSAANRYMTEVRRLALPQSQTEIVYRGFRELEESLMSPHSFDRY* 1486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3108 1485 MobiDBLite consensus disorder prediction 302 321 - -
Dod04g3108 1485 Gene3D - 1180 1424 IPR042538 -
Dod04g3108 1485 PANTHER BNAC05G49530D PROTEIN 2 1482 - -
Dod04g3108 1485 Pfam Nup133 N terminal like 54 543 IPR014908 -
Dod04g3108 1485 Gene3D - 531 883 - -
Dod04g3108 1485 MobiDBLite consensus disorder prediction 442 464 - -
Dod04g3108 1485 Pfam Non-repetitive/WGA-negative nucleoporin C-terminal 875 1293 IPR007187 -
Dod04g3108 1485 Gene3D Nucleoporin, helical domain, central subdomain 1057 1154 IPR042537 -
Dod04g3108 1485 MobiDBLite consensus disorder prediction 304 321 - -
Dod04g3108 1485 Gene3D - 893 1054 IPR042533 -
Dod04g3108 1485 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP155 2 1482 IPR004870 GO:0005643|GO:0006913|GO:0017056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g3108 04 54759727 54772797 Dod04g3108 04 54759727 54772797 ECH